PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_15912-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 165aa    MW: 17916.2 Da    PI: 9.6474
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_15912-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000165476123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ Cg+ F++   L  H  +H
  TRIUR3_15912-P1 54 FVCKTCGRAFTTFQALGGHRTSH 76
                     89**********99998888877 PP
2zf-C2H213.70.00019105127123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C++Cg  F +   L  H+r+H
  TRIUR3_15912-P1 105 HDCHICGLGFETGQALGGHMRRH 127
                      56********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.3E-44977IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.56E-65080No hitNo description
SMARTSM003550.235476IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.7625481IPR007087Zinc finger, C2H2
PfamPF139121.2E-95478IPR007087Zinc finger, C2H2
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
SuperFamilySSF576671.43E-5102131No hitNo description
SMARTSM003550.22105127IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.702105132IPR007087Zinc finger, C2H2
PfamPF139127.0E-10105130IPR007087Zinc finger, C2H2
PROSITE patternPS000280107127IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MGAGMKHARE EEVLSLALSL RTDSSTSSAD SAGAPARKRA RRGRVVATSG EGEFVCKTCG  60
RAFTTFQALG GHRTSHLRGR HGLELGVGVA RAIKERQRQE DKQQHDCHIC GLGFETGQAL  120
GGHMRRHREE MALSGAIDRW VALSEQETGH QAAAHRPPVL LELFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3591611e-108AK359161.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1090O23.
GenBankAK3666281e-108AK366628.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2045A18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149185.14e-86zinc finger protein ZAT4-like
TrEMBLM7YQ501e-114M7YQ50_TRIUA; Uncharacterized protein
STRINGTRIUR3_15912-P11e-115(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.13e-20C2H2 family protein