PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_16070-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family G2-like
Protein Properties Length: 257aa    MW: 28656.3 Da    PI: 7.8133
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_16070-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like37.45.6e-126896129
          G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtP 29
                     kprl+WtpeLHerF +av++LGG++   P
  TRIUR3_16070-P1 68 KPRLKWTPELHERFADAVKKLGGPDSEPP 96
                     79**********************97666 PP
2G2-like47.92.9e-151071362655
          G2-like  26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      +AtPk+i+++m+++gLtl+h+kSHLQk+Rl
  TRIUR3_16070-P1 107 EATPKAIMRVMGIPGLTLYHLKSHLQKFRL 136
                      7****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-2766137IPR009057Homeodomain-like
SuperFamilySSF466896.45E-1367137IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-76894IPR006447Myb domain, plants
PfamPF002491.5E-870134IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.3E-9106137IPR006447Myb domain, plants
PfamPF143792.0E-24183229IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MCSMQAEHCQ YMTEPEQMYH QQQQQFHDHR QHMSSRPSLS PEKKFFMKGQ GGAGGGGDSG  60
LILSTDAKPR LKWTPELHER FADAVKKLGG PDSEPPSDGY ITDTIAEATP KAIMRVMGIP  120
GLTLYHLKSH LQKFRLSKNL QAQANAVNAK NVYGFGTATD KACEGHGSSG DHLNRETNTS  180
RSMHINDALQ MQIEVQRRLH EQIEVQRHLQ LRIEAQGKYL HSVLEKAQEA LGKQHVVAGL  240
EAAEPTQRLP ELASSQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-1668138258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-1668138258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-1668138157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-1668138157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-1668138157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-1668138157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-1668138258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-1668138258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-1668138258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-1668138258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-1668138258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-1668138258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:12008900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3625980.0AK362598.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2008K07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161185.11e-140myb-related protein 1-like
SwissprotQ9FK471e-70PHLA_ARATH; Myb-related protein 1
TrEMBLM7YY440.0M7YY44_TRIUA; Myb family transcription factor APL
STRINGTRIUR3_16070-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35743879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18240.46e-60myb-related protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]