PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_16274-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 345aa    MW: 39148.6 Da    PI: 6.9555
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_16274-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00076166190123
                      EEETTTTEEESSHHHHHHHHHH..T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                      + C+ C+k ++  +++++H+++  H
  TRIUR3_16274-P1 166 FFCSLCNKQYKLAYEFESHLSSydH 190
                      67*****************987555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004431.0E-1868114IPR000467G-patch domain
PROSITE profilePS5017417.96470116IPR000467G-patch domain
PfamPF015852.0E-1771112IPR000467G-patch domain
PROSITE patternPS000280168190IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MENRSYYGGI GSGSKNPPPS GKEAGDEEYG GGYDRLDEEV EFRLPRGHRP VENLDTEGLE  60
QASVDTQLAS SNVGFRLLQK MGWKSGKGLG KNEQGILEPI KAGIRDAKLG VGKQEQDDFF  120
TAEDNVQRKR LNVELEETEE HIKKREVTAE REQKIRSEVK EIQKTFFCSL CNKQYKLAYE  180
FESHLSSYDH NHRKRFKEMK EMQSGNSGSR DDRQKREQQR EEKELAKFAQ LADAHRKQQK  240
EKQEQPDISG EQATPKNLPT PGNQDQRRTL KFGFSKMTPY KTTNEVTFTS CSLIPHMSPA  300
CLLSNSLYMY HALEANSAPV GNMSMKPKIA TKVPSVFGND SDEEA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2488230.0AK248823.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf8m08, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166155.10.0G patch domain-containing protein 8
TrEMBLM7ZGA70.0M7ZGA7_TRIUA; G patch domain-containing protein 8
STRINGTRIUR3_16274-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1017579