PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_16471-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 319aa    MW: 35293.4 Da    PI: 5.7771
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_16471-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.29.4e-0944100155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++  +g+++++++d  +      ++r + g ++t+e Aa+ ++ a++k++g
  TRIUR3_16471-P1  44 SVYRGVSRHCASGKYEVHLWDrHYR-StaENRRGRQGAYDTEEAAARTYDLAALKYWG 100
                      78*******************6655.3343488888********************98 PP
2AP252.99.1e-17146203155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV  ++k+grW+A+I + s  g    +++ +lg f t eeAa+a++ a+ +l+g
  TRIUR3_16471-P1 146 SKYRGVAKHHKKGRWEARIGCGSGSGsggGKRYLYLGIFITQEEAARAYDLAAIQLRG 203
                      89*******************7774444677************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-1044112IPR016177DNA-binding domain
PfamPF008472.4E-644100IPR001471AP2/ERF domain
SMARTSM003802.0E-545117IPR001471AP2/ERF domain
PROSITE profilePS5103216.25245111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-945111IPR001471AP2/ERF domain
CDDcd000183.50E-17146213No hitNo description
SuperFamilySSF541715.75E-14146212IPR016177DNA-binding domain
PfamPF008475.5E-11146203IPR001471AP2/ERF domain
SMARTSM003805.0E-22147217IPR001471AP2/ERF domain
PROSITE profilePS5103217.398147211IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.9E-15147211IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
PTWSSSASAC SGGSRIGLPC AVANQKKKKR ARSDAVVVPA RGSSVYRGVS RHCASGKYEV  60
HLWDRHYRST AENRRGRQGA YDTEEAAART YDLAALKYWG AQCGGLLLNF PVDTYKDELE  120
RMQRVTREEY VAILRRDSSG FTRGASKYRG VAKHHKKGRW EARIGCGSGS GSGGGKRYLY  180
LGIFITQEEA ARAYDLAAIQ LRGLAAVTNF DVDSYYVDQQ LQPPLCKVDP DPEPAGQLLL  240
PKVEPKEEEP EPGPVLRDDV DDVDCAIAEV LQALCMDRAD FEARYPPRGA PGWWPSDDDL  300
RELPADVGFE DDIESVLFD
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149714.10.0ethylene-responsive transcription factor WRI1-like
SwissprotQ6PQQ36e-63AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ84Z027e-63CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A446R1460.0A0A446R146_TRITD; Uncharacterized protein
STRINGTRIUR3_16471-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134012730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-63AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  3. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]
  4. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  5. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  6. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  7. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]