PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_16981-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WOX
Protein Properties Length: 162aa    MW: 18095.4 Da    PI: 9.0799
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_16981-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.38.2e-21666257
                     T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     ++R+++t+eql +Lee+++   r+p+a+++++++++l    +++ ++V++WFqN++a++++
  TRIUR3_16981-P1  6 STRWCPTPEQLMILEEMYRGgLRTPNASQIQQITAHLahygRIEGKNVFYWFQNHKARDRQ 66
                     58*****************99*************************************996 PP
2Wus_type_Homeobox121.43.7e-39567264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       ++tRW+PtpeQ++iLee+y+ GlrtPn+++iq+ita+L++yG+ie+kNVfyWFQN+kaR+rqk
    TRIUR3_16981-P1  5 PSTRWCPTPEQLMILEEMYRGGLRTPNASQIQQITAHLAHYGRIEGKNVFYWFQNHKARDRQK 67
                       689***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.025267IPR001356Homeobox domain
SMARTSM003891.2E-4471IPR001356Homeobox domain
SuperFamilySSF466892.74E-11470IPR009057Homeodomain-like
CDDcd000864.26E-5567No hitNo description
PfamPF000461.9E-18666IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.3E-7866IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MPQTPSTRWC PTPEQLMILE EMYRGGLRTP NASQIQQITA HLAHYGRIEG KNVFYWFQNH  60
KARDRQKLRR RLCMSHHLLS CAHYYAAANA GQYHQQQQLL GAGAVPPPLL QHPQQQQYYS  120
ASCAGGGYDQ HLLPTTVPAS AYAAAAGYAY PFAGVPASRE EA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0401841e-108BT040184.1 Zea mays full-length cDNA clone ZM_BFc0070F13 mRNA, complete cds.
GenBankKJ7269461e-108KJ726946.1 Zea mays clone pUT3492 HB transcription factor (HB82) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164197.11e-90putative WUSCHEL-related homeobox 2
TrEMBLM8AVP11e-115M8AVP1_TRIUA; Putative WUSCHEL-related homeobox 2
STRINGTRIUR3_16981-P11e-116(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21773897
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.12e-42WOX family protein