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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | TRIUR3_17083-P1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 107aa MW: 11740.3 Da PI: 8.7477 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 29.3 | 2.9e-09 | 50 | 106 | 1 | 67 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklk 67
+fYn Y+ evGF vr +ks+ + +++ +++ vC + gk+ + +++ +tr+gC+a+++
TRIUR3_17083-P1 50 EFYNLYSWEVGFGVRYAKSRLNVHQK-KCMQEIVCACAGKPLQANSR---------STRCGCNAMIR 106
6*****************99995555.77899********9986655.........9********97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 7.6E-6 | 50 | 106 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 107 aa Download sequence Send to blast |
VGKAADVREP SSSRMTALEA SVHAFVDKKS GNVVNPSIGT SFDSVEEGYE FYNLYSWEVG 60 FGVRYAKSRL NVHQKKCMQE IVCACAGKPL QANSRSTRCG CNAMIRL |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020155776.1 | 1e-50 | protein FAR1-RELATED SEQUENCE 5-like | ||||
| TrEMBL | T1MH74 | 1e-74 | T1MH74_TRIUA; Uncharacterized protein | ||||
| STRING | TRIUR3_17083-P1 | 2e-75 | (Triticum urartu) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP619 | 19 | 91 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G80010.1 | 4e-11 | FAR1-related sequence 8 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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