PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_17109-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 181aa    MW: 20712.4 Da    PI: 9.795
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_17109-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR178.21.6e-2415104190
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                      +f+  Y+ ++GF+vr+++++ksk +g it+ ++vCs+eg+r+++k++ ++++r+raetrtgC+ ++ ++  +  +++ev++l+ eHnH l+
  TRIUR3_17109-P1  15 NFWTCYGGHTGFDVRVNYENKSKLDGVITSTRYVCSNEGYRRKDKRD-NSTKRPRAETRTGCNVRMGITIVReAENYEVHELVVEHNHVLQ 104
                      69******************************************999.9********************99889**************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.7E-1915103IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
PQIGMKFNST KEAWNFWTCY GGHTGFDVRV NYENKSKLDG VITSTRYVCS NEGYRRKDKR  60
DNSTKRPRAE TRTGCNVRMG ITIVREAENY EVHELVVEHN HVLQLPGTSH LMPSQRKISA  120
LQAFEIETAD DSGIVPKRAH ELASRQVGGP LNLGYTCRDR KNHLRTRRQR DLMYGEAGSM  180
L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR6269340.0CR626934.1 Triticum aestivum.
GenBankCT0097350.0CT009735.1 Triticum aestivum.
GenBankEU8359820.0EU835982.1 Triticum aestivum clone BAC 1067B03, complete sequence.
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310602.13e-86protein FAR1-RELATED SEQUENCE 5
TrEMBLT1MH991e-134T1MH99_TRIUA; Uncharacterized protein
STRINGTRIUR3_17109-P11e-135(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-17FAR1-related sequence 5