PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_17194-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 195aa    MW: 20344.2 Da    PI: 10.4783
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_17194-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.2e-083257227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                     kt+lC+ +     Ck Gd+C+FaHg+
  TRIUR3_17194-P1 32 KTKLCNKYNTAEGCKWGDKCHFAHGE 57
                     8***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.2E-142860IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-82961IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2163058IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-53257IPR000571Zinc finger, CCCH-type
SuperFamilySSF548142.75E-698137IPR009019K homology domain, prokaryotic type
PROSITE profilePS5008411.049101141IPR004088K Homology domain, type 1
PfamPF000131.2E-5103137IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.109.0E-7103138IPR004088K Homology domain, type 1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MSNLGGQAFA HPQGRMPAES AVPDGQPTPT VKTKLCNKYN TAEGCKWGDK CHFAHGEREL  60
GKHTFINNSM PPRMGTRPIG HFGPPAMPGP AMTTPTGFGA SSTAKVSVDA SLVGGIIGRG  120
GVNTKQISGV TGAKLAIRLE DLTAAAAVGR EATSRPSCAT TSRKDRARLA TDATLPMART  180
SCANRLPREV DLPTH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ3907731e-144HQ390773.1 Triticum aestivum clone UCDTA01224 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164455.12e-84zinc finger CCCH domain-containing protein 14-like
RefseqXP_020164559.18e-85zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R04e-64C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLM7ZLH71e-140M7ZLH7_TRIUA; Zinc finger CCCH domain-containing protein 14
STRINGTRIUR3_17194-P11e-141(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-12C3H family protein