PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_17243-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 347aa    MW: 40408.8 Da    PI: 7.5174
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_17243-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3469.8e-15311141199
                      HHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  11 lksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        ++r+++p k a+++ g++++++   tl+ +sg++W+v +  +k  ++ ++  GW eF++a++L+e+D + Fk +g+ +f   v +f++
  TRIUR3_17243-P1  31 DFQQRISIPEKIANNFiGKITNGG--FTLKAPSGEEWRVGV--EKIADELFFMPGWVEFARAHELQENDLLFFKCSGNGSF--DVLIFDA 114
                      445689*******77787777776..8999***********..******99999********************9888777..8888875 PP
2B349.95.8e-162523391199
                      HHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
               B3  11 lksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                       +++ l++p kfa++h +g   ++ +l l+  + ++W +k+ y ++  r +  + W++Fv++n+L+eg ++vF+l++  ++++++v+v+rk
  TRIUR3_17243-P1 252 RTNNFLIVPSKFAADHlEGR--SHEMLLLRPNRKEKWYLKY-YHGSVTRGFNCRRWSKFVRDNRLREGYVCVFELMKGaRKATMTVHVLRK 339
                      456789**********7555..444788888999*******.6666666556679*******************99877*********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-2019117IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.71721115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-1823117IPR015300DNA-binding pseudobarrel domain
CDDcd100174.86E-1623113No hitNo description
SMARTSM010195.2E-1024115IPR003340B3 DNA binding domain
PfamPF023622.4E-1232113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-18233338IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-19234338IPR015300DNA-binding pseudobarrel domain
CDDcd100174.57E-16239338No hitNo description
PROSITE profilePS5086311.914242340IPR003340B3 DNA binding domain
SMARTSM010191.9E-11245340IPR003340B3 DNA binding domain
PfamPF023621.6E-14251339IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
CGRCREWQEH YYWEHMEDVS KISFFKFMTG DFQQRISIPE KIANNFIGKI TNGGFTLKAP  60
SGEEWRVGVE KIADELFFMP GWVEFARAHE LQENDLLFFK CSGNGSFDVL IFDAGGCEKV  120
SCFFASKKGT NMRKQFDNIV CQHGEEHCIL SDSNDTSMPL SQLVRSTHKA STSKKPRTET  180
ESPKNNNCFL KNEAVEEEEE SDNHHTESDY YYYSRFANCL SEDDREEIFG LASIQLGNPV  240
YVAVLQKTHV RRTNNFLIVP SKFAADHLEG RSHEMLLLRP NRKEKWYLKY YHGSVTRGFN  300
CRRWSKFVRD NRLREGYVCV FELMKGARKA TMTVHVLRKV DDKFVLL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193657.10.0B3 domain-containing protein Os12g0592300-like
SwissprotQ2QMT21e-146Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLT1MHM70.0T1MHM7_TRIUA; Uncharacterized protein
STRINGTRIUR3_17243-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-31B3 family protein