PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_17292-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 230aa    MW: 25945.5 Da    PI: 7.71
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_17292-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.27.8e-27959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     +ri+n++nrqvtfskRr g++KKA EL +LCda+ a+i+fsstg+ly+++s
  TRIUR3_17292-P1  9 ERIDNTTNRQVTFSKRRGGLMKKARELAILCDADLALIVFSSTGRLYDFAS 59
                     69***********************************************86 PP
2K-box70.35.9e-2482171998
            K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      + +++a+ +q+e++ L+++++nLq+++R+llGe+L+  ++++Lq L +q+e sl ++R++K++++ ++i+el +k   +q+en +L kkl
  TRIUR3_17292-P1  82 NPTSEAKLWQREVTTLRQQVQNLQHNNRQLLGEELSGTTIRDLQFLVNQVEMSLHSVRKRKEQVMAAEIHELNQKGFLIQKENIELGKKL 171
                      56788999******************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.371161IPR002100Transcription factor, MADS-box
CDDcd002658.18E-41277No hitNo description
SuperFamilySSF554551.83E-31291IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-28323IPR002100Transcription factor, MADS-box
PfamPF003197.9E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.2E-2384171IPR002487Transcription factor, K-box
PROSITE profilePS5129713.22787177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MGRGKIAIER IDNTTNRQVT FSKRRGGLMK KARELAILCD ADLALIVFSS TGRLYDFASS  60
SGMEAILERY QEAKEEHCGV LNPTSEAKLW QREVTTLRQQ VQNLQHNNRQ LLGEELSGTT  120
IRDLQFLVNQ VEMSLHSVRK RKEQVMAAEI HELNQKGFLI QKENIELGKK LSIAHEHNIE  180
LQKKLSGAMA SSEQQAGGST SKAAAGLLLS TRVREPNIDL ELRQQEHEDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-23177176MEF2C
5f28_B7e-23177176MEF2C
5f28_C7e-23177176MEF2C
5f28_D7e-23177176MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM5029030.0AM502903.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM31C (WM31C gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153469.11e-157MADS-box transcription factor 25-like
SwissprotQ84NC51e-108MAD25_ORYSJ; MADS-box transcription factor 25
TrEMBLM7Z5361e-167M7Z536_TRIUA; MADS-box transcription factor 25
STRINGTRIUR3_17292-P11e-167(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.14e-65AGAMOUS-like 21
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  3. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]