PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_17375-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bHLH

Protein Properties

Length: 216aa MW: 24447 Da PI: 4.919

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_17375-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.5	6.5e-10	53	92	10	54
HHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 rrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L TRIUR3_17375-P1 53 RRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 92 9*****************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.925	43	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.5E-8	49	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.79E-14	53	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-7	53	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.6E-14	53	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.84E-6	59	97	No hit	No description
CDD	cd04873	2.16E-5	144	184	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MELDEQAFLE ELFSLRRDAT AAWECNAMGD FFSPACAGAA AMDCFPERHQ PTRRRRKRLN 60 DRLSMLRSVV PKISKMDRTS ILGDTIDYMK ELLERIRRLQ EEMEEPHAGP AAAPLLSVFR 120 ELNPNEMLAR NTPKFEVERK EEDTRVEIYC AAKPGLLLST VSTLDTLGLD IQQCVVSCFN 180 DFAMHASCSE MQREMISADA IKQELFKNAG YGGGCL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK356349	0.0	AK356349.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1033I10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020154444.1	1e-104	transcription factor ABORTED MICROSPORES-like
Swissprot	Q9LSL1	2e-67	BH093_ARATH; Transcription factor bHLH93
TrEMBL	M7ZIK7	1e-159	M7ZIK7_TRIUA; Transcription factor bHLH93
STRING	TRIUR3_17375-P1	1e-159	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1302	37	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	3e-49	beta HLH protein 93

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]