PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_17567-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 703aa MW: 80305.3 Da PI: 5.9819

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_17567-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.4	5.8e-24	83	172	2	89
FAR1 2 fYneYAkevGFsvrkskskkskr.ngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fYneYA+++GF r+ +s++sk ++ +++r+fvCs+eg ++++ + + +++r+r++ r gC+a+++v +e +++w+v+kl++ HnH+l TRIUR3_17567-P1 83 FYNEYARHLGFPFRVGRSRRSKGaEEVVVMRRFVCSREGMYRKKNPSsdEATKKRERMSMREGCNAMMEVVRE-SNHWVVSKLDTAHNHNL 172 *******************651566789*****8777665545788999************99.9************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-21	83	172	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.3E-29	265	356	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.14	544	580	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.6E-9	546	577	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0011	555	582	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 703 aa Download sequence Send to blast
AARSEGDELI ADYVDCLMSL DTNAQSVQND NLILGDPVIE AGIAASVGGI TEQNAMKDFV 60 PPEDPKEPLL GMTFESDEAA KTFYNEYARH LGFPFRVGRS RRSKGAEEVV VMRRFVCSRE 120 GMYRKKNPSS DEATKKRERM SMREGCNAMM EVVRESNHWV VSKLDTAHNH NLGTCSRVGY 180 LRDRGLLDAS NKITMMGSDG VPFLRQNILG EGGDAQGLLD YLKKMQGNDP AFFHAIQVDK 240 NSCLMNVFWA DARAKLAYQH FGDAVTFDTT YKKNKYMMPF VTFSGVNHHL QRVIFGCALL 300 MEDTECSFVW LFETWLAAMS GKAPCSLVTD QNRAMKAAIG RVFPHTCHRF CKWHILSRTK 360 QKLAHTYSEH PTLIDELESC VIESETINTF ETAWMSIIDT YDLRNNTWLQ AMYNIRQKWV 420 PLYLMDTFCA EISKAQKLET MNDFYKKYFS TKVTLEVFLT QFDLSIENHY EEEAKADMDT 480 SLNLVTTKTA SPMEKQAART YTKAVFSRFQ EEFTESLAYI IQKTKDGCIS EYNVMKDENS 540 SDTFCVTYNA SNKMAKCSCK YFEFSGILCR HILGVFIIVD PHLLPPDYYL KRWTRKARDC 600 GLLEYNCDNH QDDACQSITS RYDVLCADAI RYAEKGSGSE TVYKAAKDIL QKAYEEIIVY 660 ERNPTRVSQR DAININEDVM VDDSMTDQSL PDSRQKVCLM LNI

Sequence ? help Back to Top

Protein Sequence Length: 703 aa Download sequence Send to blast

AARSEGDELI ADYVDCLMSL DTNAQSVQND NLILGDPVIE AGIAASVGGI TEQNAMKDFV  60
PPEDPKEPLL GMTFESDEAA KTFYNEYARH LGFPFRVGRS RRSKGAEEVV VMRRFVCSRE  120
GMYRKKNPSS DEATKKRERM SMREGCNAMM EVVRESNHWV VSKLDTAHNH NLGTCSRVGY  180
LRDRGLLDAS NKITMMGSDG VPFLRQNILG EGGDAQGLLD YLKKMQGNDP AFFHAIQVDK  240
NSCLMNVFWA DARAKLAYQH FGDAVTFDTT YKKNKYMMPF VTFSGVNHHL QRVIFGCALL  300
MEDTECSFVW LFETWLAAMS GKAPCSLVTD QNRAMKAAIG RVFPHTCHRF CKWHILSRTK  360
QKLAHTYSEH PTLIDELESC VIESETINTF ETAWMSIIDT YDLRNNTWLQ AMYNIRQKWV  420
PLYLMDTFCA EISKAQKLET MNDFYKKYFS TKVTLEVFLT QFDLSIENHY EEEAKADMDT  480
SLNLVTTKTA SPMEKQAART YTKAVFSRFQ EEFTESLAYI IQKTKDGCIS EYNVMKDENS  540
SDTFCVTYNA SNKMAKCSCK YFEFSGILCR HILGVFIIVD PHLLPPDYYL KRWTRKARDC  600
GLLEYNCDNH QDDACQSITS RYDVLCADAI RYAEKGSGSE TVYKAAKDIL QKAYEEIIVY  660
ERNPTRVSQR DAININEDVM VDDSMTDQSL PDSRQKVCLM LNI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020193510.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_020193511.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_020193512.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	T1MII9	0.0	T1MII9_TRIUA; Uncharacterized protein
STRING	TRIUR3_17567-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-152	FAR1-related sequence 5