PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_17853-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HD-ZIP

Protein Properties

Length: 203aa MW: 22098.9 Da PI: 9.8729

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_17853-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.9	1.9e-19	93	147	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t+eq Le+ F+ ++ +s+ e+++LA +lgL+ rqV vWFqNrRa+ k TRIUR3_17853-P1 93 RKKLRLTAEQAALLEKSFRAHNVLSHGEKQDLAGQLGLKPRQVEVWFQNRRARTK 147 788899***********************************************98 PP
2	HD-ZIP_I/II	112.4	2.9e-36	93	181	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl++eq++lLE+sF++++ L++ +K++la +Lgl+prqv+vWFqnrRARtk+kq+E d+e L++++++l+++n+rL++e +e r+ TRIUR3_17853-P1 93 RKKLRLTAEQAALLEKSFRAHNVLSHGEKQDLAGQLGLKPRQVEVWFQNRRARTKLKQTELDCELLRQWCERLSDDNARLRRELAETRA 181 69*********************************************************************************998775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.4E-19	71	150	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.07E-18	78	150	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.297	89	149	IPR001356	Homeobox domain
SMART	SM00389	3.2E-16	91	153	IPR001356	Homeobox domain
Pfam	PF00046	8.3E-17	93	147	IPR001356	Homeobox domain
CDD	cd00086	6.05E-14	93	150	No hit	No description
PRINTS	PR00031	3.0E-6	120	129	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	124	147	IPR017970	Homeobox, conserved site
PRINTS	PR00031	3.0E-6	129	145	IPR000047	Helix-turn-helix motif
SMART	SM00340	7.9E-11	149	192	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MSSASRESLE AEELVDTRLS LVIGAGTHPP PVQAPLLPPE AEGRVPGNTG RKKGEKWIVG 60 GSTRQHGKRA RAVHGGSDID DGDDGGDSAG RARKKLRLTA EQAALLEKSF RAHNVLSHGE 120 KQDLAGQLGL KPRQVEVWFQ NRRARTKLKQ TELDCELLRQ WCERLSDDNA RLRRELAETR 180 AVLLVGGSQG STLTGCPSCN RLA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	90	96	RARKKLR
2	141	149	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020189356.1	1e-104	putative homeobox-leucine zipper protein HOX26
Swissprot	Q67UX6	5e-46	HOX26_ORYSJ; Putative homeobox-leucine zipper protein HOX26
TrEMBL	M7Z2Y0	1e-143	M7Z2Y0_TRIUA; Putative homeobox-leucine zipper protein HOX26
STRING	TRIUR3_17853-P1	1e-144	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8315	32	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22800.1	3e-34	HD-ZIP family protein