PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_18019-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 228aa    MW: 24424.2 Da    PI: 10.3975
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_18019-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.13e-152366750
                     HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                       r+v fskR+ g++ KA+ LS L++a+va ++fs++gk++ ++
  TRIUR3_18019-P1 23 DARYVCFSKRKRGLFSKASALSLLTGAQVAAVVFSPSGKVFFFA 66
                     579************************************99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.745969IPR002100Transcription factor, MADS-box
SMARTSM004324.7E-18968IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.02E-191079IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-101131IPR002100Transcription factor, MADS-box
PfamPF003199.0E-181964IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-103146IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-104667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAPKRKGGNG RKKTVLLPIV KEDARYVCFS KRKRGLFSKA SALSLLTGAQ VAAVVFSPSG  60
KVFFFAHPSV DAVVNRFMAG DAALVKAAAA DHGLQTLQLQ HGEMRSELAD QKKRKKRAEE  120
ALDKERAAGD QIASWLHPDA RDMGHDDMAA FAAALLQVQA AVSGRANQVL VEAFRVDISR  180
MLQVPPPPPP PLQLFGASTF EFGSSSSSAN AGMEMPPPPD FPAVMGMQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111115KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172838.11e-118agamous-like MADS-box protein AGL29
TrEMBLT1MJQ61e-163T1MJQ6_TRIUA; Uncharacterized protein
STRINGTRIUR3_18019-P11e-164(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.18e-22M-type_MADS family protein