PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_18095-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 349aa MW: 39872.2 Da PI: 8.1733

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_18095-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.1	2.6e-12	208	233	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ TRIUR3_18095-P1 208 YQPDICKDYKETGYCGYGDSCKFMHD 233 66789********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	1.83E-9	205	238	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.1E-7	207	234	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.878	207	235	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.8E-10	208	233	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.9E-12	208	238	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:3.30.40.10	7.6E-14	270	326	IPR013083	Zinc finger, RING/FYVE/PHD-type
Pfam	PF13920	1.2E-8	284	325	No hit	No description
SuperFamily	SSF57850	1.98E-13	284	327	No hit	No description
CDD	cd00162	3.33E-8	285	326	No hit	No description
SMART	SM00184	7.5E-5	285	322	IPR001841	Zinc finger, RING-type
PROSITE profile	PS50089	10.689	285	323	IPR001841	Zinc finger, RING-type
PROSITE pattern	PS00518	0	300	309	IPR017907	Zinc finger, RING-type, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MTRRDYSCRW SHMESESSSG AHGVSQVQCT SRFDVWWRTF AKVEFVRVVS NIIVQANLWN 60 DGSTAQGRTG PRRARLFDSI HSSTSTTSKL FFSSADNSHE PRRFQFESSR TIQSSTDNRA 120 TATLETETAY DRDARAIRER QLKQAEESLK KNPSASSSSG ELYKGIHGYT DHKAGFRREH 180 TVSGEKAGGA HGPLRASAHI RLSTRFDYQP DICKDYKETG YCGYGDSCKF MHDRGDYKSG 240 WQLEREWDEA EKARKRRIAM RELDGSDAEA EEEDSDDDEA LPFACFICRE PFVDPVVTKC 300 KHYFCEHCAL KHHSKNKKCF VCNKPTLGIF NAAQEIRKKI AQDKKQQDL

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MTRRDYSCRW SHMESESSSG AHGVSQVQCT SRFDVWWRTF AKVEFVRVVS NIIVQANLWN  60
DGSTAQGRTG PRRARLFDSI HSSTSTTSKL FFSSADNSHE PRRFQFESSR TIQSSTDNRA  120
TATLETETAY DRDARAIRER QLKQAEESLK KNPSASSSSG ELYKGIHGYT DHKAGFRREH  180
TVSGEKAGGA HGPLRASAHI RLSTRFDYQP DICKDYKETG YCGYGDSCKF MHDRGDYKSG  240
WQLEREWDEA EKARKRRIAM RELDGSDAEA EEEDSDDDEA LPFACFICRE PFVDPVVTKC  300
KHYFCEHCAL KHHSKNKKCF VCNKPTLGIF NAAQEIRKKI AQDKKQQDL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5z56_M	2e-62	106	340	100	317	RING finger protein 113A
5z58_M	2e-62	106	340	100	317	RING finger protein 113A
6ff4_t	2e-62	106	340	100	317	RING finger protein 113A
6ff7_t	2e-62	106	340	100	317	RING finger protein 113A
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK361400	0.0	AK361400.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1139O11.
GenBank	AK371103	0.0	AK371103.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2125B03.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020156391.1	0.0	zinc finger CCCH domain-containing protein 15
Swissprot	Q6K4V3	1e-152	C3H15_ORYSJ; Zinc finger CCCH domain-containing protein 15
TrEMBL	M7YKI5	0.0	M7YKI5_TRIUA; Zinc finger CCCH domain-containing protein 15
STRING	TRIUR3_18095-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8071	36	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01350.1	1e-125	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]