PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_18402-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 261aa    MW: 30323.1 Da    PI: 8.1911
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_18402-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF831.9e-26959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     k+ien++ rqvtfskRr g+lKKA+EL +LCda+v vi+fs +gk+yey+s
  TRIUR3_18402-P1  9 KKIENTTSRQVTFSKRRMGLLKKANELAILCDAQVGVIVFSGSGKMYEYAS 59
                     68***********************************************86 PP
2K-box58.82.3e-20851621491
            K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                      +++  +e++++k+e + L+   R+++GedL+sL+l++  +Leqq+e sl k+R +K++ll +q+ e++++e  ++e++
  TRIUR3_18402-P1  85 QQKIIHEMTRMKDESNRLKIIMRQYMGEDLGSLTLQDVSNLEQQIEFSLYKVRLRKQQLLDQQLLEMRQREMHMSEDQ 162
                      678889******************************************************************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.0E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.314161IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.62E-30279IPR002100Transcription factor, MADS-box
CDDcd002651.98E-38276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-28323IPR002100Transcription factor, MADS-box
PfamPF003193.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-283859IPR002100Transcription factor, MADS-box
PfamPF014865.6E-1782162IPR002487Transcription factor, K-box
PROSITE profilePS5129712.37985176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGRGKVELKK IENTTSRQVT FSKRRMGLLK KANELAILCD AQVGVIVFSG SGKMYEYASP  60
PWRIANIFDR YLKAPSTRFD EMDVQQKIIH EMTRMKDESN RLKIIMRQYM GEDLGSLTLQ  120
DVSNLEQQIE FSLYKVRLRK QQLLDQQLLE MRQREMHMSE DQSSSYMFHM VILCCNLLTL  180
DEFACVCQKK NPARDQPGQS ADVMNPKLFP LWDVGDQIYG QDAESSMTAL KLSPQLQEYK  240
LQPVQPNLQE GNLHGYVLRL W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A6e-16160160MEF2 CHIMERA
6byy_B6e-16160160MEF2 CHIMERA
6byy_C6e-16160160MEF2 CHIMERA
6byy_D6e-16160160MEF2 CHIMERA
6bz1_A6e-16160160MEF2 CHIMERA
6bz1_B6e-16160160MEF2 CHIMERA
6bz1_C6e-16160160MEF2 CHIMERA
6bz1_D6e-16160160MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180820.11e-167MADS-box transcription factor 31-like
SwissprotQ84NC22e-91MAD31_ORYSJ; MADS-box transcription factor 31
TrEMBLM8B0Q30.0M8B0Q3_TRIUA; MADS-box transcription factor 31
STRINGTRIUR3_18402-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.33e-41MIKC_MADS family protein
Publications ? help Back to Top
  1. Schilling S, et al.
    Non-canonical structure, function and phylogeny of the Bsister MADS-box gene OsMADS30 of rice (Oryza sativa).
    Plant J., 2015. 84(6): p. 1059-72
    [PMID:26473514]