PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_18519-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 606aa    MW: 65910.8 Da    PI: 8.7258
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_18519-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH253.4e-08140162426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      ++C++f+r G C+ Gd+C F+Hg
  TRIUR3_18519-P1 140 VPCPNFRRPGGCPSGDNCEFSHG 162
                      79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.6E-4136163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.126136164IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5137165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-6139164IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-6140162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-4169201IPR000571Zinc finger, CCCH-type
SMARTSM0035621172195IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MPRTTRLCSV PQGSFGFASP AKAPAAGQDG RRSSSDPARP DWIGVDRPAP GDDEGNRSPS  60
SRSSSLSPIT VDRAKKEYPV DPTLPDIKSS VYASDEFRMF AFKVRPCSRA YSHDWTECPF  120
VHPGENARRR DPRKHPYTAV PCPNFRRPGG CPSGDNCEFS HGVFESWLHP TQYRTRLCKE  180
GAACARRICF FAHDEDELRH VPHNSGAGLL SPRATSSIDM TAAAALGLLP GSPRHFVPPP  240
GSPSAVNNGG AASAHWLQGS RLRSSFNARD ATVEDLGLLL DWESQYLGAL CLPPSSRPQP  300
RLSTGLSIRP TAIAPTSLED MYASEMAMSP RFTNDQGHSA YSPAHKSAIL NKLHQQKGLL  360
SPVNTNRISR PQPRLSTGLS IRPTAIAPTS LEDMYASEMA MSPRFTNDQG HSAYSPAHKS  420
AILNKLHQQK GLLSPVNTNR MYSPRALDPA ALVHPPIGGM SPRSPRLMEP TSPMSARFGA  480
TVPQREMYEQ FSNLNKHQLP SVGSPRNSNA ASWGNVGSSP MGKVDWGVDG EELDRLRCPD  540
QPGFAEKEPD APWGRSLNSN RGEMQLGMSG GMASGSANRP DWNNQADLLD QMAIGAWLEQ  600
LQTDQK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3571940.0AK357194.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1047P21.
GenBankAK3633920.0AK363392.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2015B03.
GenBankAK3646120.0AK364612.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2026O22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185855.10.0zinc finger CCCH domain-containing protein 50-like
SwissprotQ84SL20.0C3H50_ORYSJ; Zinc finger CCCH domain-containing protein 50
TrEMBLM8AQ260.0M8AQ26_TRIUA; Zinc finger CCCH domain-containing protein 50
STRINGTRIUR3_18519-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.13e-96CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]