PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_18670-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HB-other
Protein Properties Length: 327aa    MW: 36100.5 Da    PI: 8.0095
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_18670-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox283.8e-092482812255
                      SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                       +yps+ e+  LA+++gL++rq+ +WF N+R ++
  TRIUR3_18670-P1 248 WPYPSEPEKLVLAESTGLDTRQINNWFVNQRKRH 281
                      69*****************************885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.1E-1866110IPR005540KNOX1
PfamPF037905.3E-2067108IPR005540KNOX1
SMARTSM012568.0E-6114164IPR005541KNOX2
PfamPF037915.5E-5120162IPR005541KNOX2
SMARTSM011880.0045195216IPR005539ELK domain
PROSITE profilePS5007112.455221284IPR001356Homeobox domain
SuperFamilySSF466891.88E-17222290IPR009057Homeodomain-like
SMARTSM003893.5E-12223288IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.1E-23227285IPR009057Homeodomain-like
CDDcd000861.47E-11229284No hitNo description
PfamPF059208.4E-15241280IPR008422Homeobox KN domain
PROSITE patternPS000270259282IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MDQLPLLGSG PRAAAITGNA LAPSFVAMDQ HAASTSTSPP EKAPPATPFR APEHRGKSNY  60
NRRSSDTIKA KIMSHPLYPA LLGAFIDCRR VGAPPEVVGR LSSLVDELQP SSDDMQEQPA  120
DPELDQRPTV RDMLVVYSQE LTRQIQEASE LLRSAEAHID SFAVEDNNYN ECGGSSEDEQ  180
ETRDVAGLPS GEGKQLTSQL LDKYSGYLRS LWRDLSGKKK KKKKKKSGRL PREACQRLLH  240
WWQLHQGWPY PSEPEKLVLA ESTGLDTRQI NNWFVNQRKR HWRPAPPAMG SRLQHIDAGA  300
CSSSSPAVLG MEGQHFTGRS GYPDGGP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217225KKKKKKKKK
2219225KKKKKKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175442.10.0homeobox protein knotted-1-like 4
SwissprotQ75LX71e-100KNOS4_ORYSJ; Homeobox protein knotted-1-like 4
TrEMBLT1MLH60.0T1MLH6_TRIUA; Uncharacterized protein
STRINGTRIUR3_18670-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47462950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.17e-57KNOTTED-like from Arabidopsis thaliana