PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_18803-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 306aa    MW: 31618.3 Da    PI: 9.6273
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_18803-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.32.7e-0896121227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      kt+ C  +     Ck+Gd+C+FaHg+
  TRIUR3_18803-P1  96 KTRMCTKYNTAEGCKFGDKCHFAHGE 121
                      89**********************96 PP
2zf-CCCH38.42.1e-12272297127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ykt++C +f++ GtC +G+rC+FaHg+
  TRIUR3_18803-P1 272 YKTKICENFLK-GTCTFGERCHFAHGE 297
                      9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.23562IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.6343563IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-53660IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-83660IPR000571Zinc finger, CCCH-type
PfamPF146080.354360No hitNo description
PROSITE profilePS5010313.65794122IPR000571Zinc finger, CCCH-type
SMARTSM003560.1294121IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-895125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-1495127IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-596121IPR000571Zinc finger, CCCH-type
SuperFamilySSF547915.32E-14162239IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.107.2E-15166237IPR004088K Homology domain, type 1
SMARTSM003221.1E-10167237IPR004087K Homology domain
PROSITE profilePS5008413.754168232IPR004088K Homology domain, type 1
PfamPF000132.9E-10170233IPR004088K Homology domain, type 1
CDDcd001051.78E-12170228No hitNo description
SuperFamilySSF902295.89E-9270301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-14270301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.619271298IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-9271297IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-10272297IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MDAAARKRSR PESANGGAAG GKRSRESESQ QTGLSSKSKP CTKFFSTVGC PFGEGCHFAH  60
FVPGGYQTVS KSHSLGHAAV SAPSRAPADH AASGVKTRMC TKYNTAEGCK FGDKCHFAHG  120
ERELGRPPSS YMSQESSYAP PMGGRYGGRH EPPPPASMGP PAGNFGASST CKVSVDAALA  180
GGIIGKGGVN TKQICRITGV KLSIRDHESN PDLKNIELEG SFDQIKQAND MVRDLIASIS  240
ASTPSKNPAS AAAPAGRGGG GGGGGPGGRS NYKTKICENF LKGTCTFGER CHFAHGETEQ  300
RKGAAV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2506930.0AK250693.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf85e04, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020173136.10.0zinc finger CCCH domain-containing protein 31-like
SwissprotQ7XPK11e-143C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31
TrEMBLM7Z9F50.0M7Z9F5_TRIUA; Zinc finger CCCH domain-containing protein 31
STRINGTRIUR3_18803-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-60C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]