PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_18885-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 73aa MW: 8175.56 Da PI: 7.4444

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_18885-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	23.4	1.5e-07	6	29	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++CpdCg +F r ++L+ H+ t H TRIUR3_18885-P1 6 FPCPDCGDVFVRAESLHLHQATrH 29 89*******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.014	6	34	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.12E-5	6	27	No hit	No description
PROSITE pattern	PS00028	0	8	29	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 73 aa Download sequence Send to blast
MRAAIFPCPD CGDVFVRAES LHLHQATRHA VSELGPEDTS RNIIEIIFQS SWLKKQSPVC 60 AVDRILKVVI LSM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020162022.1	1e-41	uncharacterized protein LOC109747356
TrEMBL	M8AR96	1e-46	M8AR96_TRIUA; Uncharacterized protein
STRING	TRIUR3_18885-P1	2e-47	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2633	38	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	6e-28	C2H2-like zinc finger protein