PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_19005-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bHLH

Protein Properties

Length: 238aa MW: 25829.5 Da PI: 8.2216

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_19005-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.3	1.3e-08	172	199	2	29
HHHHHHHHHHHHHHHHHHHHHHHCTSCC CS HLH 2 rrahnerErrRRdriNsafeeLrellPk 29 ++ah +Er+RR+++N+ + Lr+l+P TRIUR3_19005-P1 172 KTAHITVERNRRKQMNEHLTVLRSLMPC 199 689************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.051	170	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.89E-7	170	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.19E-6	172	204	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.6E-7	172	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.0E-6	172	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MAEVLLVGAS LTAVQLLRYL CHPDSSHDHH PSKRPISLCL KEAKLSSQDL PLAHNILPCT 60 TQPAATKHKL VRVMGDALCD QLLVDVDGEF QLPTDAEDLF SILETWEDCV NGAAAALSPT 120 AGASSRGGLL GGSAPGNKSS KRRARQDECD GIAQAQKRQK CSPEEGGGAA PKTAHITVER 180 NRRKQMNEHL TVLRSLMPCF YVKRVLYYRY SARLSLIDSD INLHGSSSLG IGIQSYVK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020176650.1	8e-84	transcription factor SPEECHLESS-like
TrEMBL	M7YNX1	1e-175	M7YNX1_TRIUA; Transcription factor SPEECHLESS
STRING	TRIUR3_19005-P1	1e-176	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3484	35	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53210.1	1e-15	bHLH family protein