PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_19009-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

M-type_MADS

Protein Properties

Length: 112aa MW: 12961.4 Da PI: 10.3632

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_19009-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	102	2.2e-32	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s TRIUR3_19009-P1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.4E-40	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	33.137	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	5.53E-40	2	72	No hit	No description
SuperFamily	SSF55455	2.09E-30	2	61	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-33	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.0E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-33	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-33	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 112 aa Download sequence Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSG 60 QSIPSFSYLV ARKIEAKRLL YGCLVAGLLR FFWDGVFWIF GLSCELWLPH VK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	4e-19	1	59	1	59	MEF2C
5f28_B	4e-19	1	59	1	59	MEF2C
5f28_C	4e-19	1	59	1	59	MEF2C
5f28_D	4e-19	1	59	1	59	MEF2C
6byy_A	3e-19	1	59	1	59	MEF2 CHIMERA
6byy_B	3e-19	1	59	1	59	MEF2 CHIMERA
6byy_C	3e-19	1	59	1	59	MEF2 CHIMERA
6byy_D	3e-19	1	59	1	59	MEF2 CHIMERA
6bz1_A	3e-19	1	59	1	59	MEF2 CHIMERA
6bz1_B	3e-19	1	59	1	59	MEF2 CHIMERA
6bz1_C	3e-19	1	59	1	59	MEF2 CHIMERA
6bz1_D	3e-19	1	59	1	59	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. May be involved in the control of flowering time. {ECO:0000269\|PubMed:9339904, ECO:0000269\|Ref.9}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM502875	1e-95	AM502875.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM10A (WM10A gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001289804.1	2e-37	MADS-box transcription factor 8
Refseq	XP_020178163.1	2e-37	MADS-box transcription factor 8-like
Swissprot	Q9SAR1	6e-37	MADS8_ORYSJ; MADS-box transcription factor 8
TrEMBL	M8A3H4	2e-75	M8A3H4_TRIUA; MADS-box transcription factor 8
STRING	TRIUR3_19009-P1	4e-76	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24260.1	9e-38	MIKC_MADS family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Jang YH, et al. Survey of rice proteins interacting with OsFCA and OsFY proteins which are homologous to the Arabidopsis flowering time proteins, FCA and FY. Plant Cell Physiol., 2009. 50(8): p. 1479-92 [PMID:19561057] Cui R, et al. Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa). Plant J., 2010. 61(5): p. 767-81 [PMID:20003164] Bai X, et al. Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice. Sci Rep, 2016. 6: p. 19022 [PMID:26744119]