PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_19080-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 976aa    MW: 109761 Da    PI: 6.607
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_19080-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.55.7e-146447181796
                      E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      v+p kf++++gg+   s+t+ le+++g  +++++  +k  +++vl+  GW+ Fv+a+g++e+D+++F+++++s+fe  v v
  TRIUR3_19080-P1 644 VIPYKFIDHFGGN--ISRTIELESRNGSMYTIEV--SKLMNETVLRqHGWEAFVDAHGVEENDSLLFRHIEKSRFE--VLV 718
                      9******888999..889****************..888888666549*********************9989995..444 PP
2B347.72.8e-15861950895
                      -HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEE CS
               B3   8 sdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkld.gr.sefelvvk 95 
                      +++++++ +v+pk faeeh   ++es+ ltl+   ++++W   +++rk ++++vlt + W +F ++ng++egD +vF+ + g+ ++ +++v+
  TRIUR3_19080-P1 861 KMSTQNRTIVIPKLFAEEHF--PRESQNLTLQRpGKSKKWHPWFSIRKDRCGHVLTgSRWVGFLRDNGVQEGDLCVFQPVqGTgTRSKFTVH 950
                      566777889**********8..457778***995566*******99******9998678*******************66244455555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.1360.703.2E-2028121IPR005148Arginyl tRNA synthetase N-terminal domain
SMARTSM010163.7E-1332119IPR005148Arginyl tRNA synthetase N-terminal domain
PfamPF034851.5E-1338119IPR005148Arginyl tRNA synthetase N-terminal domain
SuperFamilySSF551903.66E-1049127IPR005148Arginyl tRNA synthetase N-terminal domain
SuperFamilySSF523745.63E-71110454No hitNo description
PfamPF007504.5E-100117449IPR001278Arginine-tRNA ligase
TIGRFAMsTIGR004562.3E-101121542IPR001278Arginine-tRNA ligase
Gene3DG3DSA:3.40.50.6203.3E-92122454IPR014729Rossmann-like alpha/beta/alpha sandwich fold
PRINTSPR010382.0E-19129145IPR001278Arginine-tRNA ligase
PRINTSPR010382.0E-19153166IPR001278Arginine-tRNA ligase
PRINTSPR010382.0E-19294315IPR001278Arginine-tRNA ligase
Gene3DG3DSA:1.10.730.103.3E-26457543IPR009080Aminoacyl-tRNA synthetase, class Ia, anticodon-binding
SuperFamilySSF473235.49E-24457544IPR009080Aminoacyl-tRNA synthetase, class Ia, anticodon-binding
PfamPF057465.7E-21463543IPR008909DALR anticodon binding
SMARTSM008364.3E-14463548IPR008909DALR anticodon binding
SuperFamilySSF1019364.51E-17619724IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.3E-9627722IPR003340B3 DNA binding domain
PROSITE profilePS5086311.039628722IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.6E-16639723IPR015300DNA-binding pseudobarrel domain
PfamPF023626.4E-12644718IPR003340B3 DNA binding domain
CDDcd100172.72E-14644720No hitNo description
Gene3DG3DSA:2.40.330.101.3E-18849953IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-16852952IPR015300DNA-binding pseudobarrel domain
CDDcd100171.28E-17854952No hitNo description
PROSITE profilePS5086311.448854955IPR003340B3 DNA binding domain
SMARTSM010195.6E-8856955IPR003340B3 DNA binding domain
PfamPF023629.6E-14857951IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006420Biological Processarginyl-tRNA aminoacylation
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0009570Cellular Componentchloroplast stroma
GO:0003677Molecular FunctionDNA binding
GO:0004814Molecular Functionarginine-tRNA ligase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 976 aa     Download sequence    Send to blast
MGGEAAFTSS STPHSQPQET EAIQCRVESV KRHLSRLVVK SLCAVAADFD VEPMLEVSKS  60
GFSDYQCNNA MSLFPRIRES ATNLGNPNAV GQAIADNLPP SRIVESTSVV GPGYVNIVLS  120
SDWIAQEMHV GHIRSTIIGD TLARIFEFAN IEVLRCNHVG DWGTQFGMLI QFLFEKFPNG  180
EEAANQAIGD LQSFYRDAKK KFDEDPDFKG RAQQAVVRLQ RGEDRYLAAW KSICQISRNE  240
FDLVYKRLNV ELEEKGESFY NPYIPRVLEE LTGKGLITES KGARVIEGRK PPLIVVKRDG  300
GFNYASTDLA ALWYRLNVEM AEWIIYVTDV GQQQHFHSVF SAARMAGWLP DQKEEKYPKA  360
SHVGFGFVLG ADGSRFRTRS SDGAVRLVDL LDEAKSQSLA QLIKRLTENG QIAKWTDEEL  420
DKTSEAIGYG AVKYADLKNN RLTDYKFSYE QMLSDKGNTA VYLQYAHARI CSIIQKSNKD  480
VEELKMTEFI TLGHPDERSL GLHLIQFAEV VEQICDDLSP HRLCDYLYTL SERFSQFYTN  540
CQTCQCFMIS REYHDRFLQI PCQPKAACVH ICIGGPESSS LNHHFLLELL CQVHMAGLAS  600
QVKRYCDCYK RYAGHLDGKM RCFRGRMTAN FRHGMGSRSA VNPVIPYKFI DHFGGNISRT  660
IELESRNGSM YTIEVSKLMN ETVLRQHGWE AFVDAHGVEE NDSLLFRHIE KSRFEVLVLD  720
SDDCEKVLPS AGIKVASCNV QESCSMDYID ISSSSGDDTT RSPGSQRFAA CERGDSSHPR  780
KTALKNDSSS EEDSGEDTDA AEEHSEHELS FELDDIRQTP CAGRAYVLSR CGHLSGAQEE  840
RVTRFLQDVR AETPVFVAIM KMSTQNRTIV IPKLFAEEHF PRESQNLTLQ RPGKSKKWHP  900
WFSIRKDRCG HVLTGSRWVG FLRDNGVQEG DLCVFQPVQG TGTRSKFTVH LLHESLGASG  960
STGPKKRVGC CYGRPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4q2t_A1e-1284154134562Arginine--tRNA ligase, cytoplasmic
4q2t_B1e-1284154134562Arginine--tRNA ligase, cytoplasmic
4q2x_A1e-1284154134562Arginine--tRNA ligase, cytoplasmic
4q2x_B1e-1284154134562Arginine--tRNA ligase, cytoplasmic
4q2y_A1e-1284154134562Arginine--tRNA ligase, cytoplasmic
4q2y_B1e-1284154134562Arginine--tRNA ligase, cytoplasmic
4r3z_B1e-12841541102630Arginine--tRNA ligase, cytoplasmic
4zaj_A1e-1284154115543Arginine--tRNA ligase, cytoplasmic
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtForms part of a macromolecular complex that catalyzes the attachment of specific amino acids to cognate tRNAs during protein synthesis. {ECO:0000250|UniProtKB:P54136}.
UniProtForms part of a macromolecular complex that catalyzes the attachment of specific amino acids to cognate tRNAs during protein synthesis. {ECO:0000250|UniProtKB:P54136}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188333.10.0arginine--tRNA ligase, cytoplasmic-like isoform X1
SwissprotO232470.0SYRM_ARATH; Arginine--tRNA ligase, chloroplastic/mitochondrial
SwissprotQ9C7130.0SYRC_ARATH; Arginine--tRNA ligase, cytoplasmic
TrEMBLM7YDV60.0M7YDV6_TRIUA; Arginyl-tRNA synthetase
STRINGTRIUR3_19080-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP400422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-10B3 family protein
Publications ? help Back to Top
  1. McElver J, et al.
    Insertional mutagenesis of genes required for seed development in Arabidopsis thaliana.
    Genetics, 2001. 159(4): p. 1751-63
    [PMID:11779812]
  2. Yogeeswaran K, et al.
    Comparative genome analyses of Arabidopsis spp.: inferring chromosomal rearrangement events in the evolutionary history of A. thaliana.
    Genome Res., 2005. 15(4): p. 505-15
    [PMID:15805492]
  3. Duchêne AM, et al.
    Dual targeting is the rule for organellar aminoacyl-tRNA synthetases in Arabidopsis thaliana.
    Proc. Natl. Acad. Sci. U.S.A., 2005. 102(45): p. 16484-9
    [PMID:16251277]
  4. Berg M,Rogers R,Muralla R,Meinke D
    Requirement of aminoacyl-tRNA synthetases for gametogenesis and embryo development in Arabidopsis.
    Plant J., 2005. 44(5): p. 866-78
    [PMID:16297076]
  5. Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D
    Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.
    Plant Physiol., 2011. 155(4): p. 1678-89
    [PMID:21139083]