PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_19095-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 207aa    MW: 22872.3 Da    PI: 9.995
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_19095-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.47.3e-151965455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      h ++Er+RR++iN++f eL  ++P +     kK++K +iL+ A++Y+k+Lq
  TRIUR3_19095-P1 19 DHIMAERKRREKINQRFIELSAVIPGL-----KKMDKGTILTDATRYVKELQ 65
                     699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.371564IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-191973IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-171975IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-121965IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.05E-142069No hitNo description
SMARTSM003537.4E-162170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
CVSQRTRRAS TKSTPYAQDH IMAERKRREK INQRFIELSA VIPGLKKMDK GTILTDATRY  60
VKELQEKVRS LEAAGGNHRS VETVVLVRKP CRPVAPDVGE SSARFLLAAG TPAIGNQLPE  120
VEAKLSEDNV MVRIHCEMNG KGLVARVLAE VEELHLRIVH NDVMPFTAST VIITTMAKAK  180
GFTVNIEEIV GRLNSALYQH SSSNNNS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12328ERKRRE
22429RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3659951e-50AK365995.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2039J24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170214.11e-127transcription factor NAI1-like
TrEMBLT1MMN71e-151T1MMN7_TRIUA; Uncharacterized protein
STRINGTRIUR3_19095-P11e-151(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.17e-40bHLH family protein