PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_19198-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 411aa    MW: 45344.9 Da    PI: 6.0743
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_19198-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind98.85.4e-311942862103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      F+ k++++++d++++ +++w   +n+f+vld+  f++ +Lp+yFkh+nfaSFvRQLn+YgF+kv+ +          weF+h+sF +g+ +ll 
  TRIUR3_19198-P1 194 FVAKTFHMVSDPATDAVVRWGGASNTFLVLDPAAFSDFLLPSYFKHRNFASFVRQLNTYGFRKVDPDV---------WEFAHESFLRGQAKLLP 278
                      9********************999****************************************9877.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                       i rkk++
  TRIUR3_19198-P1 279 LIVRKKKR 286
                      ****9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.2E-34185277IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.18E-30190283IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.1E-47190283IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.5E-27194283IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-16194217IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-16232244IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340233257IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-16245257IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MCVVCHEEGH ASAYCPTRGW PLMLQIMGNA IPSEGFFCLP FVETEGEEVR APLVADAAII  60
SAAPGTLSIP ILEAELPHLF EGEWDWQVSA IDVDQFSVVF PNKAMLRMAT RSGKLYLSLN  120
NILAGIKDLR QEEPKAPTWG SAVGHSGGML LGINLVCLEV VAWDAGRFFL SAHVRHRATL  180
REWEQQEDGG VAPFVAKTFH MVSDPATDAV VRWGGASNTF LVLDPAAFSD FLLPSYFKHR  240
NFASFVRQLN TYGFRKVDPD VWEFAHESFL RGQAKLLPLI VRKKKRAGRE LCEEEEEVRG  300
TIQAVQRLRD ERRGMEEELQ AMDRRLCAAE NRPGQMMAFL GKLADDPGVV LRAMVAKKEE  360
LAAAGAGGKD SSPDKRRRIG ADAGRGADAA DQAAQSRAVP FPFSNLGQVF Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A8e-241912837110Heat shock factor protein 1
5hdn_A8e-241912837110Heat shock factor protein 1
5hdn_B8e-241912837110Heat shock factor protein 1
5hdn_C8e-241912837110Heat shock factor protein 1
5hdn_D8e-241912837110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1374378KRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2085520.0KF208552.1 Triticum aestivum heat shock factor C1b (HsfC1b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179067.11e-134heat stress transcription factor C-1b-like
SwissprotQ942D61e-125HFC1B_ORYSJ; Heat stress transcription factor C-1b
TrEMBLM7ZVX20.0M7ZVX2_TRIUA; Heat stress transcription factor C-1b
STRINGTRIUR3_19198-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112983141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-56heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Schmidt R, et al.
    Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica.
    AoB Plants, 2012. 2012: p. pls011
    [PMID:22616023]