PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_19214-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 103aa    MW: 11151.3 Da    PI: 6.7922
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_19214-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.12e-08448344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT    + + da +++ ++   +W  +ar++g g+t +++k ++
  TRIUR3_19214-P1  4 SWTFKQNKVFEDALAKYDKDtpdRWQNVAREVGDGKTVEDVKKHF 48
                     7*******************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.759156IPR017884SANT domain
SMARTSM007172.2E-6154IPR001005SANT/Myb domain
SuperFamilySSF466898.52E-11355IPR009057Homeodomain-like
PfamPF002491.0E-5448IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MSSSWTFKQN KVFEDALAKY DKDTPDRWQN VAREVGDGKT VEDVKKHFAE LEKDVDEIHT  60
NGAGSSSNNI KGGSSRGGSS HGQRYLCGLA NVVALTPLPL LGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-165741179RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519219e-81JF951921.1 Aegilops speltoides clone TaMYB38 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167022.13e-44protein RADIALIS-like 4 isoform X1
RefseqXP_020167023.13e-44protein RADIALIS-like 4 isoform X2
SwissprotQ1A1732e-19RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLM8A0Z31e-70M8A0Z3_TRIUA; Uncharacterized protein
STRINGTRIUR3_19214-P12e-71(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.13e-21RAD-like 6