PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_19224-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 1068aa    MW: 119373 Da    PI: 5.885
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_19224-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.71.4e-20123215190
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f+k+lt sd++++g +++p++ ae++      +++++++ +l+ +d + ++W++++i+r++++r++lt+GW+ Fv+ ++L +gD+v+F +   s
  TRIUR3_19224-P1 123 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldfSLQPPCQ-ELQARDIHDNVWTFRHIFRGQPKRHLLTTGWSLFVSGKKLFAGDSVIFVRA--S 213
                      99******************************9999986.************************************************943..3 PP

                      EE CS
               B3  89 ef 90 
                       +
  TRIUR3_19224-P1 214 PT 215
                      33 PP
2Auxin_resp86.74.5e-292112771883
       Auxin_resp  18 rastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      ras++eFv++++k++ka++ +++s+GmRf+m+ ete+  +rr++Gt++g+sdldpvrW+nS+WrsL+
  TRIUR3_19224-P1 211 RASPTEFVIPFAKYQKAMYsNQISLGMRFRMMCETEELGTRRYMGTITGISDLDPVRWKNSQWRSLQ 277
                      899***************989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.05E-36112217IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-33115217IPR015300DNA-binding pseudobarrel domain
CDDcd100175.38E-18122219No hitNo description
PROSITE profilePS5086310.673123225IPR003340B3 DNA binding domain
SMARTSM010191.7E-18123224IPR003340B3 DNA binding domain
PfamPF023622.2E-18123215IPR003340B3 DNA binding domain
PfamPF065072.3E-24211277IPR010525Auxin response factor
PfamPF023094.0E-89321020IPR033389AUX/IAA domain
PROSITE profilePS5174526.9479351019IPR000270PB1 domain
SuperFamilySSF542772.65E-69491014No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1068 aa     Download sequence    Send to blast
MAQSPASSAV AASAPCEVLA MYDWEDNSAY VYRKQLDLFL ENPCPKYLVA ASMQKDVEAH  60
VPSYPNLPSK LICLLHSVTL QADPDTDEVY AQMTLQPVNT YAKEALQLSE LALRQARPQM  120
EFFCKTLTAS DTSTHGGFSV PRRAAEKIFP SLDFSLQPPC QELQARDIHD NVWTFRHIFR  180
GQPKRHLLTT GWSLFVSGKK LFAGDSVIFV RASPTEFVIP FAKYQKAMYS NQISLGMRFR  240
MMCETEELGT RRYMGTITGI SDLDPVRWKN SQWRSLQVGW DESAAGERRN RVSIWEIEPL  300
AAPFFICPQP FFGVKRPRQL DDESLEMESL MKRAMPWLGE EVCIKDPQTQ SATMPGLSLV  360
QWMNMNRQQS SSLASTAMQS EYLRSASNPA MQNIGAADLA RQLYMQNHLL QQNSMQFNPP  420
KLHQQMKPIN DLSNAALPLN QLSAIRNHQD QKQDQQRQQQ SSIQAIPLSQ AQAQTNIVQA  480
QVILQNQMQQ QQQQKQPPPS PTQNQHGASG QHLLQSHQLQ DQNLQMQQQQ LLLHQQLQQQ  540
QQLNKLPGQL ANLASQQTQL SDQELHLQLL QKLQQQSLMS QSAVTLSRLP IIQEQQNFLV  600
DMQQQLSNSH SLAQQQVMPQ QDCRTSSLQT TQLPPPIQQE QQQQQQQKPS QKQVAPTYVS  660
EAAFAQISST SVIPKTGNAM IVPGAAQSAV TEEIPSCSTS PSTANGNHLA QPTIGRNDHC  720
KTSTEKVPHS IAQMSILTPI EAVSVTPVTT KELPKLNNGV KSSAITSKLP NIVSGLQNFM  780
NNALPTDNLE TASSATSLWP SQTDGLLHQG FATSNFNQHQ MFKDELPDVE IQGVDPSNSA  840
LFGMNNDGPL GFPMETEGLL ENALDSVKYQ NHFSTDDENN YQMQKDARQE ISTSMVSQSF  900
GQSDMAFNSI DSAINDGALM NRSSWPPAAP PQRMRTFTKV YKRGAVGRSI DIGRFSGYGE  960
LNQALARMFG IEGQLEDRQR IGWKLVYTDH EDDVLLLGDD PWEEFVNCVK CIRILSPQEV  1020
QKMSLDGDLG SNVLPNQACS SSDGGNTWKP RYEQNSGNPS IGPYDQFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A9e-974929884388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155071.10.0auxin response factor 5-like isoform X1
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLM7YE860.0M7YE86_TRIUA; Auxin response factor
STRINGTRIUR3_19224-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.11e-148auxin response factor 19