PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_19274-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 613aa    MW: 66152.4 Da    PI: 4.9629
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_19274-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.63.3e-06348369426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      +lC+f++  G C+ G+ CkF+H+
  TRIUR3_19274-P1 348 KLCHFYMH-GKCQQGNACKFSHD 369
                      79**8888.*************7 PP
2zf-CCCH18.24.3e-06375397225
                      -S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                      k ++C +far G C  Gd C++ H
  TRIUR3_19274-P1 375 KSKPCTHFAR-GSCLKGDDCPYDH 397
                      6789******.************* PP
3zf-CCCH22.12.6e-07403424526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C++f ++G C +Gd+CkF+H+
  TRIUR3_19274-P1 403 PCHNFVENGMCFRGDKCKFSHV 424
                      7********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.187344371IPR000571Zinc finger, CCCH-type
SMARTSM003560.0072345370IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-6345369IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4372398IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.281373400IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5373399IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-5375398IPR000571Zinc finger, CCCH-type
SMARTSM003560.0037401425IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-5402425IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-4403423IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-4403424IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.864403426IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MEDSLVPPGC SVPPEDAESE RGKDLGEEET AVRTSVIENP SPAAVDAATG NPIADPAVAP  60
QRYMEHQVAG VQRAEGVTDM VVGGNLCRET VALVEELGAE DVLRSMKDCL EGEVDELAEP  120
DVMVVNDDEH LLLDTMMTNF SGLIADASGG KPSMLNYGVS GGEPHNDGSI AEGVKELGAG  180
TEEDRPVGDS DQHSVDGGVV EEGEIEGDMQ ALDVDESDDS EIEDADDEEL GEDFANRVLG  240
ENESSGLSTP KIKGTSDLVL NKEGYIKDDA LKHVTRAHAV SYDEIVEWNE TPLPDTEAPK  300
PGKRKRHLTE ERKAKKTKNK RVKRAQQRIA DGVKRLKLAP VIKPKPVKLC HFYMHGKCQQ  360
GNACKFSHDT TPLTKSKPCT HFARGSCLKG DDCPYDHELS KYPCHNFVEN GMCFRGDKCK  420
FSHVVPTADG PPKPDAKKSD ASLVSEKPGR EQTSSQKASA DHDGEHITSA PTKHYSILKN  480
LAGISVNALK ASTGTPKGVQ FRPSSKDRSN SSMLHQDALP IEKHMYTNGS KHQNFDGPQA  540
AEGDKNAIPN KQRSHPLFDE KNSLKEASSH PSSDPKRTSL PTGSTTVLGS LSTQHEVSEA  600
SRILQEFLFG AGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3658510.0AK365851.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2038E14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184316.10.0zinc finger CCCH domain-containing protein 7
RefseqXP_020184317.10.0zinc finger CCCH domain-containing protein 7
RefseqXP_020184318.10.0zinc finger CCCH domain-containing protein 7
RefseqXP_020184319.10.0zinc finger CCCH domain-containing protein 7
RefseqXP_020184320.10.0zinc finger CCCH domain-containing protein 7
SwissprotQ657B30.0C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7
TrEMBLM7Z9210.0M7Z921_TRIUA; Zinc finger CCCH domain-containing protein 7
STRINGTRIUR3_19274-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88383743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.23e-07C3H family protein
Publications ? help Back to Top
  1. Noller B,Fischer I
    Photodissociation dynamics of the 2-propyl radical, C3H7.
    J Chem Phys, 2007. 126(14): p. 144302
    [PMID:17444707]
  2. Ali MA,Dillstrom VT,Lai JY,Violi A
    Ab initio investigation of the thermal decomposition of n-butylcyclohexane.
    J Phys Chem A, 2014. 118(6): p. 1067-76
    [PMID:24344976]