PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_19333-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Nin-like

Protein Properties

Length: 881aa MW: 96767.1 Da PI: 6.3906

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_19333-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.4	4.5e-26	520	582	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLg...........vclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yFs+++k+AAk+Lg +c+T++KriCRq+GI+RWP+Rki+++ TRIUR3_19333-P1 520 AEKTISLEVLQQYFSGSLKNAAKSLGglkwqqnvaacMCPTTMKRICRQHGISRWPSRKINKV 582 589**********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	14.845	510	602	IPR003035	RWP-RK domain
Pfam	PF02042	2.3E-23	523	582	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.27E-22	778	872	No hit	No description
SMART	SM00666	1.8E-24	787	869	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	9.9E-26	787	868	No hit	No description
PROSITE profile	PS51745	19.817	787	869	IPR000270	PB1 domain
Pfam	PF00564	3.9E-15	787	868	IPR000270	PB1 domain
CDD	cd06407	1.07E-33	788	868	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 881 aa Download sequence Send to blast
MPIEVGPAPA AAPDNTTAVA EETQRARSGN SDTPIKKTER LNNKWQFNLA LHDDSTNSSC 60 LFKEKLTHAL RYFKESTDQH LLVQVWAPVK SGDRYVLTTS GQPFVLDHQS IGLLQYRAVS 120 MMYMFSVDGD NAGELGLPGR VYKQKVPEWT PNVQYYSSTE YPRLNHAISY NVHGTVALPV 180 FDPSVQSCIA VVELIMTSKK INYADEVDKV CKALEAVNLK STEILEHPNV QICNEGRQSA 240 LVEILEILTV VCEEHKLPLA QTWVPCKYRS VLAHGGGVKK SCLSFDGSCM GEVCMSTSDV 300 AFHVIDAHMW GFRDACVEHH LQKGQGVSGK AFIYHRPCFS KDISQFCKLE YPLVHYARMF 360 GLAGCFAICL QSPYTGDDYY MLEFFLPPSC KEEDDQNALL ESILGLIHQC LRNLKVAGNG 420 ESNEASLQLS NVIMIESEDF KTNVHFENPE GFRESPEGDT HGGAHEFDKA NSKVSEGHLL 480 ADDNSQNNGV SVSRPNGSAA SDSSLLHKNG KPPERRRGKA EKTISLEVLQ QYFSGSLKNA 540 AKSLGGLKWQ QNVAACMCPT TMKRICRQHG ISRWPSRKIN KVNRSLSKLK QVIESVQGSD 600 AAFNLTSITG PLPTIPVGPS SDSFNKEKAS ESKAEHSNRA VDGDRDSSLQ KPQENGSHFG 660 ALMSQQGFAD TGNNVQLEAD KASLSRSSSG EGSINSRTSE GSCQGSPANQ TFVCQPIASM 720 FLEPQEPQLN PEGFTKEPFQ EPELPLSRML IEDSGSSKDL KNLFGSAIGQ PMLAPPSNFG 780 PMRNSGTVTI KASFKEDIVR FRFPCSSSVM ALKDEVAKRL RMDAGMFDIK YLDDDHEWVK 840 LACNADLEEC IEISRHSGTH VIRLLVTDVA AHIGSSCGSS G

Sequence ? help Back to Top

Protein Sequence Length: 881 aa Download sequence Send to blast

MPIEVGPAPA AAPDNTTAVA EETQRARSGN SDTPIKKTER LNNKWQFNLA LHDDSTNSSC  60
LFKEKLTHAL RYFKESTDQH LLVQVWAPVK SGDRYVLTTS GQPFVLDHQS IGLLQYRAVS  120
MMYMFSVDGD NAGELGLPGR VYKQKVPEWT PNVQYYSSTE YPRLNHAISY NVHGTVALPV  180
FDPSVQSCIA VVELIMTSKK INYADEVDKV CKALEAVNLK STEILEHPNV QICNEGRQSA  240
LVEILEILTV VCEEHKLPLA QTWVPCKYRS VLAHGGGVKK SCLSFDGSCM GEVCMSTSDV  300
AFHVIDAHMW GFRDACVEHH LQKGQGVSGK AFIYHRPCFS KDISQFCKLE YPLVHYARMF  360
GLAGCFAICL QSPYTGDDYY MLEFFLPPSC KEEDDQNALL ESILGLIHQC LRNLKVAGNG  420
ESNEASLQLS NVIMIESEDF KTNVHFENPE GFRESPEGDT HGGAHEFDKA NSKVSEGHLL  480
ADDNSQNNGV SVSRPNGSAA SDSSLLHKNG KPPERRRGKA EKTISLEVLQ QYFSGSLKNA  540
AKSLGGLKWQ QNVAACMCPT TMKRICRQHG ISRWPSRKIN KVNRSLSKLK QVIESVQGSD  600
AAFNLTSITG PLPTIPVGPS SDSFNKEKAS ESKAEHSNRA VDGDRDSSLQ KPQENGSHFG  660
ALMSQQGFAD TGNNVQLEAD KASLSRSSSG EGSINSRTSE GSCQGSPANQ TFVCQPIASM  720
FLEPQEPQLN PEGFTKEPFQ EPELPLSRML IEDSGSSKDL KNLFGSAIGQ PMLAPPSNFG  780
PMRNSGTVTI KASFKEDIVR FRFPCSSSVM ALKDEVAKRL RMDAGMFDIK YLDDDHEWVK  840
LACNADLEEC IEISRHSGTH VIRLLVTDVA AHIGSSCGSS G

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020163903.1	0.0	protein NLP3-like
Swissprot	Q5NB82	0.0	NLP3_ORYSJ; Protein NLP3
TrEMBL	M7ZGU8	0.0	M7ZGU8_TRIUA; Protein NLP3
STRING	TRIUR3_19333-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4778	36	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7