PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_19363-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 827aa    MW: 88120.2 Da    PI: 5.9459
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_19363-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.81.2e-20128183156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ +++t++q++++e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  TRIUR3_19363-P1 128 KKRYHRHTAHQIQQMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 183
                      688999***********************************************998 PP
2START21.64.2e-08346457190
                      HHHHHHHHHHHHHHHHC-TT-EEEE.EXCCTTEEEEEEESSS...................SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT CS
            START   1 elaeeaaqelvkkalaeepgWvkss.esengdevlqkfeeskv..................dsgealrasgvvdmvlallveellddkeqWdet 75 
                      ela +aa+ l+k+   +ep+W + + +++ + ev+  +e ++                    ++e  r+s+vv+m++ +lv  +ld + +W e 
  TRIUR3_19363-P1 346 ELASTAADHLIKMCRTSEPLWARRRgTGPSSGEVMDAEEHARMlswpidsgkqqqsdvahsARTEGTRDSAVVIMNSITLVDAFLDAN-KWMEL 438
                      578999********************9999999999998888899999999999****99999*************************.***** PP

                      -S....EEEEEEEECTTEE CS
            START  76 la....kaetlevissgga 90 
                      ++    ka t++vi  g+a
  TRIUR3_19363-P1 439 FPsivcKARTIQVIHHGAA 457
                      **************99943 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.59E-20110186IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-21113186IPR009057Homeodomain-like
PROSITE profilePS5007117.07125185IPR001356Homeobox domain
SMARTSM003891.1E-19126189IPR001356Homeobox domain
CDDcd000866.26E-19128186No hitNo description
PfamPF000463.4E-18128183IPR001356Homeobox domain
PROSITE patternPS000270160183IPR017970Homeobox, conserved site
PROSITE profilePS5084814.925337468IPR002913START domain
PROSITE profilePS5084811.592500547IPR002913START domain
SuperFamilySSF559611.08E-15561806No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 827 aa     Download sequence    Send to blast
MAAMAAGGSS ADALFASPLM PNPGALAGFM SNSSAMPFHH HFSTNLIPKE EGVMGGLHLA  60
KDEELDLDME MELSGGSGSG HLDGLLSFAD VDDDRDQKPQ HSEPDGAGAG HHPSSSAAAA  120
ASNGNGKKKR YHRHTAHQIQ QMEALFKECP HPDDKQRLKL SQELGLKPRQ VKFWFQNRRT  180
QMKAQQDRAD NVILRAENES LKTDNYRLQA AIRNVVCPSC GHAAVIGDMS YEEQNLRIEN  240
ARLKDELDRL ACIASRYGGG RQPGMSSASA LSCMSAPPPV LMPPLDLDMN VYSRHFAEQQ  300
HGAMDLMALP QQMAAGGHGI AATASYLQGP MTPVIVQEQD KQLVMELAST AADHLIKMCR  360
TSEPLWARRR GTGPSSGEVM DAEEHARMLS WPIDSGKQQQ SDVAHSARTE GTRDSAVVIM  420
NSITLVDAFL DANKWMELFP SIVCKARTIQ VIHHGAASGH LSSGSLILLI GLLMNGHADA  480
SGDAVPVSSS AGAGGGLLPV VWVEHMEVVG EEKPLQPVFK DHVADGAAFG ATRWVSVLQR  540
QCERLASELA RSIADQGVIR TPEARTNMMK LSQRMITAFC ANISASGSQS WTALSDSTED  600
TVRITTRKNT EPGQPSGVIL TAVSTSWLPF SHQQVFELLA DEQQRCQLEI LSNGGSLHEV  660
AHIANGSHPR NCISLLRINS ASNSSQNVEL LLQESSIHPD GGSLVVFATV DVDAIQVTMS  720
GEDPSYIPLL PMGFAIFPAT SPSPGATSSD TTSNGETSPG NADEPATGCL LTVGMQVLAS  780
AVPSAKLNLS SVTAINSHIC NTIHQITTAL KGAGGSRTEP APAGSDQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3731770.0AK373177.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3023B13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002464880.20.0homeobox-leucine zipper protein ROC3
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLM7ZE700.0M7ZE70_TRIUA; Homeobox-leucine zipper protein ROC3
STRINGTRIUR3_19363-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78463441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.11e-113homeobox-7