PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_19402-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 368aa    MW: 37954 Da    PI: 8.2068
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_19402-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.51.8e-06258298954
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r RR+r+ +++  L++l+P        K++ a++L +A  Y+k L
  TRIUR3_19402-P1 258 ARLRRERVSDRLRVLQKLVPGG-----SKMDTASMLDEAASYLKFL 298
                      599*****************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.37E-10240303No hitNo description
PROSITE profilePS5088814.411249298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-13255308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-12255304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-10258306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MDTFGWSGPG LHDDAYLPRP ASQLSCGRFD LDDAFLGQLQ CDFGGGGQVS SSYGAAVGGA  60
AGDSTNNGPL GFFGSGVDMF SSVVDGASAH DGLLDSAFAF SSVLPCGGEG DPGAVSNGAM  120
FSGYSGTTVC NISSGESNNY SGGGGGGRPN QASAQQVLHV SRKLPADDCP AAATVHAGTK  180
RKAPTTTATS ITFGQDTNAG AAGGYKPDME AMAQVKEMIY RAAAMRPVNL VTEPPAQGSS  240
KPRRKNVRIS SDPQTVAARL RRERVSDRLR VLQKLVPGGS KMDTASMLDE AASYLKFLKS  300
QVQALETLGI TSSSTGASAA AAASTGRLQL HSQQHYYSNN PGFLGFARNN NNISSVFRNP  360
NGNSARML
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240245KPRRKN
2258263RLRRER
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the negative regulation of flowering. May be involved in the repression of the flowering factor GI and HD1 by interacting with PIL13 and PIL15 and competing with PRR1. Possesses transactivation activity in yeast. {ECO:0000269|PubMed:21549224}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148710.10.0uncharacterized protein LOC109733912
RefseqXP_020190692.10.0uncharacterized protein LOC109776460
SwissprotA0A0P0WQ907e-47LF_ORYSJ; Transcription factor LATE FLOWERING
TrEMBLM8AQA70.0M8AQA7_TRIUA; Transcription factor bHLH87
STRINGTRIUR3_19402-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.14e-34bHLH family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]