PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_19482-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 261aa MW: 30011.1 Da PI: 9.1241

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_19482-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.1	5.2e-22	26	106	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Yn+YA+++GFs+rks++k++ ++++i+++ vCs++g+re+e++k a+trtgC+a+++ + +++g w v+k++++HnH la TRIUR3_19482-P1 26 DMYNTYASKIGFSIRKSQTKRR-QDRTIYQKYIVCSNQGERETESSK--------ATTRTGCQARVQFSVSREGIWTVQKVVTDHNHYLA 106 58*************98887.7777**********998877........9*****************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-18	27	106	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
VVDKVGQALI VPEVGKSFDS EQKAYDMYNT YASKIGFSIR KSQTKRRQDR TIYQKYIVCS 60 NQGERETESS KATTRTGCQA RVQFSVSREG IWTVQKVVTD HNHYLASPNK SHKLRSQRRV 120 VEADRALIGQ IREAGMKPSQ VYDFMVAFYG GVDKVPFSKM DCNNEIGKER KKYLESNDAK 180 TLLEYLRNKQ REDPTFFYAI QVDEKDGQIA NFFWADGPIF TYMVTHMRSE HGATVVFNST 240 DMTVTCCCRK FESIGMCTHF L

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004971460.1	1e-122	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	T1MNQ5	0.0	T1MNQ5_TRIUA; Uncharacterized protein
STRING	TRIUR3_19482-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1212	5	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-42	FAR1-related sequence 5