PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_19484-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 314aa    MW: 32433.8 Da    PI: 9.6283
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_19484-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.97.3e-08116141227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      kt+lC+ f     Ck G++C+FaHg+
  TRIUR3_19484-P1 116 KTRLCNKFNTAEGCKWGNKCHFAHGE 141
                      9***********************96 PP
2zf-CCCH37.44.4e-12280305127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +kt+lC++f + G C +GdrC+FaHg+
  TRIUR3_19484-P1 280 FKTKLCDNFNK-GSCTFGDRCHFAHGE 305
                      69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00356505775IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-46074IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.6296376IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-14111146IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-8113145IPR000571Zinc finger, CCCH-type
SMARTSM003560.07114141IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.878114142IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-5116141IPR000571Zinc finger, CCCH-type
SMARTSM003226.8E-11184254IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.102.7E-15185253IPR004088K Homology domain, type 1
PROSITE profilePS5008414.99185249IPR004088K Homology domain, type 1
PfamPF000132.6E-11187251IPR004088K Homology domain, type 1
SuperFamilySSF547916.43E-16187281IPR004088K Homology domain, type 1
CDDcd001051.31E-13187250No hitNo description
Gene3DG3DSA:4.10.1000.102.4E-16278310IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.943279306IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-8279305IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-9279309IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-9280305IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MKESPSISSH RMSTPCIVVF AGVYMSYITS NEHTLGGSKI ATPSAGTTSA PPPASSSPST  60
AGCPFGSSCH FLHNFPGGHQ AVSKMTNLGG PAVSAPQGRM PMGPGVPDGP PTPSLKTRLC  120
NKFNTAEGCK WGNKCHFAHG ERELGKPMLL NNSMAPPMGP RPNGHFQPSP MPGPDMVPPS  180
TFGASATAKI SVDASLAGAI IGKGGVNTKH ISRMTGAKLA IRDNEADPNH KNIELEGSFD  240
QVNHASAMVK ELILRIGGNA PPQAKNPGRG PAGGGGGSNF KTKLCDNFNK GSCTFGDRCH  300
FAHGESELRK SAAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3552310.0AK355231.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1017N10.
GenBankAK3566640.0AK356664.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1037L23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159826.11e-178zinc finger CCCH domain-containing protein 44-like isoform X1
RefseqXP_020159827.11e-178zinc finger CCCH domain-containing protein 44-like isoform X2
SwissprotQ69XQ31e-148C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLM8AMV70.0M8AMV7_TRIUA; Zinc finger CCCH domain-containing protein 44
STRINGTRIUR3_19484-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.18e-54C3H family protein