PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_19503-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Nin-like
Protein Properties Length: 838aa    MW: 94072.7 Da    PI: 7.728
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_19503-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK85.74.3e-27712761352
           RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                        +++e +s+yF++pi++AA+eL+v+lTvLK++CR++GI+RWPhRk+ksl
  TRIUR3_19503-P1 712 RVLTFELVSQYFYMPITQAARELNVGLTVLKKRCRELGIPRWPHRKLKSL 761
                      5699********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513758.309538IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.103.0E-1027305IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137511.6633973IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.2E-64170IPR002885Pentatricopeptide repeat
PfamPF015358.1E-84170IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007566.0E-57398IPR002885Pentatricopeptide repeat
PfamPF015359.9E-57399IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.79974100IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.969101136IPR002885Pentatricopeptide repeat
PfamPF015350.02106125IPR002885Pentatricopeptide repeat
SuperFamilySSF484525.69E-5116305IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513758.999137167IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.6E-5140164IPR002885Pentatricopeptide repeat
PfamPF015359.1E-5140164IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.687182216IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.0E-4184214IPR002885Pentatricopeptide repeat
PfamPF015351.0E-4184213IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0012216240IPR002885Pentatricopeptide repeat
PfamPF015358.6E-6216241IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.336217243IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.788244274IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.6E-4246274IPR002885Pentatricopeptide repeat
PfamPF015359.9E-5246274IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.082275309IPR002885Pentatricopeptide repeat
PfamPF130413.8E-10276322IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.0E-6277310IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.251310340IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.105.7E-5342406IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513758.659344374IPR002885Pentatricopeptide repeat
PfamPF015350.013347375IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.573376410IPR002885Pentatricopeptide repeat
PfamPF130415.7E-12376422IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.0E-7378411IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.936411441IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007567.7E-4413444IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.213447477IPR002885Pentatricopeptide repeat
PfamPF015350.038450474IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.105.7E-5510533IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513756.577513547IPR002885Pentatricopeptide repeat
PROSITE profilePS5151918.769698781IPR003035RWP-RK domain
PfamPF020425.1E-22714761IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016554Biological Processcytidine to uridine editing
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    Send to blast
MPVRDVVSWN TLLAAYSRSS HSHHLAAARR LFDEMPQRDG VTWNTLLSAY VRRGLMGEAG  60
KLFDEMPQRS VTSWNTMVTG FFAAGQVSKA LDMFNAMPVK DSASLGTLVS GLAKNGRLHE  120
AEELLTKRLT VTDMGKAVDA YNTLIAAYGQ VGRVDDARRL FDMIPRGQNQ HQMSNMRVFQ  180
RNVVSWNTMM MCYTRTGDVC SARMLFDEMP AKNLESWNTM VAGYAKVSNM QEAEKLFWEM  240
PDPDMVSWNL IIRGFTQIGE VEHARGFFDR MPERAIISWN TMISGYEQNG DYDGTIELFS  300
KMLEVGGTPD RHTFSSVLAA CASIPMLPLG AQLHQLIEKS FLPDTATSNA LITMYSRGGA  360
ITDAEAIFNQ MRTQKCLVSW NALIGGYEHH GRATEALQLF EEMRRAGVMP THITFISLLS  420
ACGNAGLVSE GWRVFHTMVH EYGIAARIEH YSALVNLIGR HGKLDDALEV INSMPIAPDR  480
SVWGSFLGAC TAKKNEPLAH MAAKELSKID PESSAPYVLI HNLHAREGRW GSASLAREEM  540
ERQGVHKHAG YSWIDLHDQW AYFAGFVRRQ LHKPKNMGIS QATQKEWIPV ENIASGLMGQ  600
VFGMIVTCLK RRRSSALYPS RATAANHCAL SAPLLRRAAV CKSSHAAPCL VPCDTDELDT  660
SFDDDLLRCW EAIEQSDDST EESGKGLPLL CYGEVNGAAS NAMRADRVRS ERVLTFELVS  720
QYFYMPITQA ARELNVGLTV LKKRCRELGI PRWPHRKLKS LQTLINDVEV LQEAGKANDD  780
GQLRAMVEML EQERRLLEQR PYVELEEKTK RLRQACFKAS YKKRRLLALE PGEASKYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5i9f_A2e-5465462427pentatricopeptide repeat protein dPPR-U10
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164803.10.0pentatricopeptide repeat-containing protein At1g62260, mitochondrial-like
TrEMBLT1MNS60.0T1MNS6_TRIUA; Uncharacterized protein
STRINGTRIUR3_19503-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108991212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.14e-36RWP-RK domain-containing protein