PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_19783-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 311aa MW: 35668.7 Da PI: 9.2837

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_19783-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75	1.5e-23	32	126	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY++YA++vGF vr+ ++kk +++ + +++f+Cs+eg+r+e++k+ ++k++r++++tr+gC+a++ vk+ d+++++++ +++H+H TRIUR3_19783-P1 32 EFYKSYAHHVGFGVRVGQQKKL-NKEVVRTKRFMCSREGFRTEKNKEtkdpsnQSKKSRKNTTTRCGCDAHIFVKLCGDNTYKIQSWVEHHSHG 124 6***************9998.777799***********999999998889999**********************************9 PP FAR1 89 la 90 l+ TRIUR3_19783-P1 125 LV 126 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.0E-21	32	126	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.3E-16	249	309	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
IPLFCSSFTP SCDEKLKPKV GMAFEGLEAV EEFYKSYAHH VGFGVRVGQQ KKLNKEVVRT 60 KRFMCSREGF RTEKNKETKD PSNQSKKSRK NTTTRCGCDA HIFVKLCGDN TYKIQSWVEH 120 HSHGLVSPDK RHLIRSNHKV NERAKNMLYT CHKASIGTCQ AYRLLQVSEG GFPYVGCSKR 180 DLQNYYRDLR LKIRNADAQM FVAQLARKQE VNPAFFYDFV VDKEGNLMYV FWADAMSRKN 240 YSHFGGDGVV SFDSTYTTNQ YDMIFAPFTG VNHHLQSVFF GAAFLCNEQT ESYVWLLETF 300 LIAMGGVAPR L

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020167235.1	1e-177	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	T1MPJ1	0.0	T1MPJ1_TRIUA; Uncharacterized protein
STRING	TRIUR3_19783-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-59	FAR1-related sequence 5