PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_19842-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

SBP

Protein Properties

Length: 252aa MW: 28015 Da PI: 5.2862

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_19842-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	38.5	3.2e-12	3	33	48	78
SEEETTT--SS--S-STTTT-------S--- CS SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78 rfh l+efDe+krsCr+rL++ n+rrr +q TRIUR3_19842-P1 3 RFHLLEEFDEAKRSCRKRLDERNRRRRAPQV 33 9**************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	12.896	1	31	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.8E-7	3	30	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	1.8E-4	3	18	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	9.42E-10	3	35	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
LFRFHLLEEF DEAKRSCRKR LDERNRRRRA PQVDSKDSWS FMITQQGTSF ASFSPPRAEP 60 SWSGIINYED SNPYYTHEVL SKSRQTFTGW TSSDTMEGCH CPFLYEGEPM SFSAGAQPLL 120 KAVTPPPPES SSSIVLSSDC ALSFLSSPAN SSSIDISWMV RPREQIPSVA QQHLVPNQQF 180 SSSSWFASSQ ASSGVCTAAG FATLPNMDID QFNAGALVLS SNDREMNCHG IFHVGADGYS 240 EGTSPYFQFS WQ

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020197530.1	1e-132	squamosa promoter-binding-like protein 18
Swissprot	Q6YZE8	1e-53	SPL16_ORYSJ; Squamosa promoter-binding-like protein 16
TrEMBL	T1MPP6	0.0	T1MPP6_TRIUA; Uncharacterized protein
STRING	TRIUR3_19842-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1755	37	95

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Wang SS,Wang CS,Tseng TH,Hou YL,Chen KY High-resolution genetic mapping and candidate gene identification of the SLP1 locus that controls glume development in rice. Theor. Appl. Genet., 2011. 122(8): p. 1489-96 [PMID:21327937] Wang S, et al. Control of grain size, shape and quality by OsSPL16 in rice. Nat. Genet., 2012. 44(8): p. 950-4 [PMID:22729225] Wang S, et al. The OsSPL16-GW7 regulatory module determines grain shape and simultaneously improves rice yield and grain quality. Nat. Genet., 2015. 47(8): p. 949-54 [PMID:26147620] Wang Y, et al. A comprehensive meta-analysis of plant morphology, yield, stay-green, and virus disease resistance QTL in maize (Zea mays L.). Planta, 2016. 243(2): p. 459-71 [PMID:26474992] Lee CM, et al. Influence of Multi-Gene Allele Combinations on Grain Size of Rice and Development of a Regression Equation Model to Predict Grain Parameters. Rice (N Y), 2015. 8(1): p. 33 [PMID:26519289] Bessho-Uehara K, et al. Loss of function at RAE2, a previously unidentified EPFL, is required for awnlessness in cultivated Asian rice. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(32): p. 8969-74 [PMID:27466405]