PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_19907-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bZIP
Protein Properties Length: 187aa    MW: 20643.8 Da    PI: 6.8035
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_19907-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.42.1e-1062100442
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeN 42 
                       kr +r   NR +A+rsR RK+++i eLe+ v +L++e 
  TRIUR3_19907-P1  62 PKRVKRILANRQSAQRSRVRKLQYISELERCVTTLQNEV 100
                      5999*******************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.1E-1459123IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.5361113IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.73E-1163117No hitNo description
Gene3DG3DSA:1.20.5.1702.1E-1163117No hitNo description
PfamPF001701.1E-963108IPR004827Basic-leucine zipper domain
CDDcd147036.82E-2464115No hitNo description
PROSITE patternPS0003606681IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MSMFPDEGGS TAPGSENGTS DSDGDKHGKD RYDDGHNDDA NPEEPGPGHA TPTSSTETIR  60
DPKRVKRILA NRQSAQRSRV RKLQYISELE RCVTTLQNEV SVLSPRVAFL DQQRTILTVG  120
NSHLKQRIAA LAQDKLFKDA HQEALKEEIE RLRQVYQQQN LRMSSGAGAA SDHGGPPPVR  180
AEKELMS
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195077.11e-134basic leucine zipper 6-like
SwissprotQ5JMK62e-88BZP06_ORYSJ; Basic leucine zipper 6
TrEMBLM7ZPW01e-136M7ZPW0_TRIUA; Transcription factor VIP1
STRINGTRIUR3_19907-P11e-136(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132238125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.15e-57bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]