PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_19927-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 189aa    MW: 21159.5 Da    PI: 7.9605
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_19927-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.51.2e-183663698
                     EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
               B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98
                     l++ede ++ W+++++y+ +s++yvltkGW+++vk+++L++gD+v F++++   ++  ++  +r
  TRIUR3_19927-P1  3 LSFEDEASKPWRFRYSYWTSSQSYVLTKGWSRYVKEKQLDAGDIVHFERVRGlGTGDRLFICCR 66
                     6899********************************************8866544444444443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.196168IPR003340B3 DNA binding domain
PfamPF023622.8E-16367IPR003340B3 DNA binding domain
SuperFamilySSF1019361.55E-15366IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-21373IPR015300DNA-binding pseudobarrel domain
CDDcd100171.10E-13554No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
LLLSFEDEAS KPWRFRYSYW TSSQSYVLTK GWSRYVKEKQ LDAGDIVHFE RVRGLGTGDR  60
LFICCRRRGE SAPPPPLRVS PPALNAGEQQ PWSPMCYSTS GSYPTSPANS HAYRRSVEQD  120
HSDMLHAGDS PREANAKSST ASGPPSRRLR LFGVNLDCGP EPEAEAATPM YDYTHQNPYA  180
AVVTVPAYW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-2516845113B3 domain-containing transcription factor NGA1
5os9_B2e-2516845113B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3752774e-69AK375277.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3089K07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195164.11e-117B3 domain-containing protein Os11g0156000-like
SwissprotQ53QI03e-92Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBLT1MPX31e-138T1MPX3_TRIUA; Uncharacterized protein
STRINGTRIUR3_19927-P11e-138(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24463889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.21e-32B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]