PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_19962-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family CPP
Protein Properties Length: 242aa    MW: 26232.8 Da    PI: 4.4943
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_19962-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.51.5e-14643542
              TCR  5 gCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42
                     +C+C+k++Cl++YC Cf+a ++C+e+C+C++C+N+e++
  TRIUR3_19962-P1  6 HCTCEKTQCLQRYCHCFEAWVFCDERCSCQGCRNTEDN 43
                     8*********************************9975 PP
2TCR49.77.5e-1685122239
              TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                      + kgCnC++s+C+k+YCeCf++g+ Cs++C+C++C N+
  TRIUR3_19962-P1  85 HVKGCNCRNSECKKLYCECFKHGVGCSDKCQCTGCANT 122
                      689**********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.7E-9243IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163427.0773124IPR005172CRC domain
PfamPF036382.9E-11641IPR005172CRC domain
SMARTSM011142.4E-1284125IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.3E-1187122IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MDDLPHCTCE KTQCLQRYCH CFEAWVFCDE RCSCQGCRNT EDNSDEVDER AEYIMKKKPD  60
AFKPKIIAGD GPGLQQQRQQ VAGVHVKGCN CRNSECKKLY CECFKHGVGC SDKCQCTGCA  120
NTFGVKGAAQ PHSDSPEGTS GGSGETLARW NGSSANINDD MASQSTEASI SMDDIHIPSE  180
LSDMDVDLGP PNQALGDGGL EDIIFNHSDF QHNVDPQTHE GFAKQGDGSL SNDANSLLQQ  240
GP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A6e-12712114120Protein lin-54 homolog
5fd3_B6e-12712114120Protein lin-54 homolog
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-126HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161254.11e-161protein tesmin/TSO1-like CXC 2
TrEMBLM7YFQ21e-180M7YFQ2_TRIUA; Uncharacterized protein
STRINGTRIUR3_19962-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122672336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04850.16e-32Tesmin/TSO1-like CXC domain-containing protein