PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_20038-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 895aa MW: 101123 Da PI: 6.6811

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_20038-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.3	5.3e-08	299	322	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +f++ G C Gd+C+F+Hgp TRIUR3_20038-P1 299 MVPCYYFQK-GNCIKGDKCPFSHGP 322 789****.***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	10.878	215	244	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.013	216	243	IPR000571	Zinc finger, CCCH-type
Pfam	PF15663	9.7E-13	217	272	No hit	No description
PROSITE profile	PS50103	11.422	246	272	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.011	248	271	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.474	296	323	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.6E-6	296	322	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.72E-6	297	321	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.6E-6	298	322	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.4E-4	300	322	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 895 aa Download sequence Send to blast
MLVKLEVMLR VARWPRKNIK KRCKDSCESA RIKKKLKQQH EEELRAEVNK QIDEVGEDND 60 NKEELASIGK GGSHKTGPTD QYVHPIDPSI PLAKNKLQQT INEIIDKQRS YLVGQCLARW 120 MYKKNIPFNA INDDFKAFSK ALGRIGPNWK QLSQHIIREK MLVQEVERAK DLFKPQLGSE 180 NRDKNMFFRL RLRAANADGA APAEAKPLTP EEEALRRNTD CIYFLASPLT CKKGNQCDFR 240 HSEGARMNPR DCYYWLNGNC LNPKCSFRHP PIDGMFGAST PGIPAVSSHY AAYNSGKQMV 300 PCYYFQKGNC IKGDKCPFSH GPQPAGNNPP EQVAKVSSFP LEQPQTQKNE FLGVKEFAQT 360 NHLIQQGGPI SDDRSKSVNR AAGNFARTAA AAIPAELASS AVKSLPKSGS VQNSMPAVNK 420 SFRTSSGEDH PECYQNNLPV ETDPMQDWNQ PYHTPPQDDM PEDSRDADDL LGESSPGFDV 480 LVANDADAGA YMHDPDDFGR DIYPVEDYEY APADFEIQPH HERELFNGMG EQGPTGQMYD 540 GYDRKRRRTS SERNLDRPSY SERRSRQRET GPVEIDGSDL RHRLRRRKIN GSPGISPERS 600 GESRRRDDRY RERAYDGHRT HRDRHQGPRG STLSSRLQGR IKLPGRSPDR VDARSERERD 660 RRQLRDRLSP VVPMDIQGGR HREAGHHQER IRQRSSERAS SARIADGKHS RRNVTDSLNF 720 ASRKDFGPES RKANGSVQSE ASLDFEGPTP LSVILQRKRQ AACGNGNGSS AHNVKEDKSA 780 AVSHRQAESL VEAEKEGYDN TISSEECKSR SGDEEYKEEG QVPASSSHGD KAEAEDMIEV 840 ENQEADNYEQ RQGESEYEAT EGYEYKSEDE NAYQDDEEEF EDDDDFARKV GVVFS

Sequence ? help Back to Top

Protein Sequence Length: 895 aa Download sequence Send to blast

MLVKLEVMLR VARWPRKNIK KRCKDSCESA RIKKKLKQQH EEELRAEVNK QIDEVGEDND  60
NKEELASIGK GGSHKTGPTD QYVHPIDPSI PLAKNKLQQT INEIIDKQRS YLVGQCLARW  120
MYKKNIPFNA INDDFKAFSK ALGRIGPNWK QLSQHIIREK MLVQEVERAK DLFKPQLGSE  180
NRDKNMFFRL RLRAANADGA APAEAKPLTP EEEALRRNTD CIYFLASPLT CKKGNQCDFR  240
HSEGARMNPR DCYYWLNGNC LNPKCSFRHP PIDGMFGAST PGIPAVSSHY AAYNSGKQMV  300
PCYYFQKGNC IKGDKCPFSH GPQPAGNNPP EQVAKVSSFP LEQPQTQKNE FLGVKEFAQT  360
NHLIQQGGPI SDDRSKSVNR AAGNFARTAA AAIPAELASS AVKSLPKSGS VQNSMPAVNK  420
SFRTSSGEDH PECYQNNLPV ETDPMQDWNQ PYHTPPQDDM PEDSRDADDL LGESSPGFDV  480
LVANDADAGA YMHDPDDFGR DIYPVEDYEY APADFEIQPH HERELFNGMG EQGPTGQMYD  540
GYDRKRRRTS SERNLDRPSY SERRSRQRET GPVEIDGSDL RHRLRRRKIN GSPGISPERS  600
GESRRRDDRY RERAYDGHRT HRDRHQGPRG STLSSRLQGR IKLPGRSPDR VDARSERERD  660
RRQLRDRLSP VVPMDIQGGR HREAGHHQER IRQRSSERAS SARIADGKHS RRNVTDSLNF  720
ASRKDFGPES RKANGSVQSE ASLDFEGPTP LSVILQRKRQ AACGNGNGSS AHNVKEDKSA  780
AVSHRQAESL VEAEKEGYDN TISSEECKSR SGDEEYKEEG QVPASSSHGD KAEAEDMIEV  840
ENQEADNYEQ RQGESEYEAT EGYEYKSEDE NAYQDDEEEF EDDDDFARKV GVVFS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	543	547	RKRRR
2	543	548	RKRRRT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK375734	0.0	AK375734.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3102P07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020191143.1	0.0	zinc finger CCCH domain-containing protein 32-like
Swissprot	Q0J952	0.0	C3H32_ORYSJ; Zinc finger CCCH domain-containing protein 32
TrEMBL	M7Z362	0.0	M7Z362_TRIUA; Zinc finger CCCH domain-containing protein 32
STRING	TRIUR3_20038-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6604	32	41

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]