PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_20325-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 551aa    MW: 59231.4 Da    PI: 7.0262
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_20325-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.35.6e-32286343260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      dDgynWrKYGqK++kgse+prsYY+C++agCp+kkkve++  d++v+ei+Y+g+Hnh+k
  TRIUR3_20325-P1 286 DDGYNWRKYGQKQMKGSENPRSYYKCSFAGCPTKKKVEQAP-DGQVTEIVYKGTHNHPK 343
                      8****************************************.***************85 PP
2WRKY88.55.7e-28450500151
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEE CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveit 51 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct+++Cpv+k+ver+++d ++v++t
  TRIUR3_20325-P1 450 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTPNCPVRKHVERASQDLRAVVTT 500
                      59******************************************9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-28279344IPR003657WRKY domain
PROSITE profilePS5081123.594280344IPR003657WRKY domain
SuperFamilySSF1182901.57E-24280344IPR003657WRKY domain
SMARTSM007741.4E-34285343IPR003657WRKY domain
PfamPF031062.0E-25286342IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.9E-30435500IPR003657WRKY domain
SuperFamilySSF1182909.94E-24442500IPR003657WRKY domain
PROSITE profilePS5081130.01445510IPR003657WRKY domain
SMARTSM007741.5E-26450502IPR003657WRKY domain
PfamPF031062.2E-20451496IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MDMPGSRQQR TCHYLAPLST IIISHGPRPV LSGESSHHRR SIPFPAARAL CSPSPSPAVS  60
LAAGDLDGCK LASSGAALAN SGPVALAFAT NTSFSAGGRG GSRLSIPMAM TPPSSFPPAS  120
PSSYFNMSSG FLDSPVLLTP SLFASPTTGA FPSHQFNWMG TPENDGLQGS TSQDEQRQYS  180
GFTFQTTAPL PAVTTTTASS FLQSAMPMAQ LVGDSYEQQQ QPWSYQDTGM NGGARPAEFT  240
TQFEPPTTST IMATTAPDVL GNGAYSVPVP SGTAGYRVQS RRPSSDDGYN WRKYGQKQMK  300
GSENPRSYYK CSFAGCPTKK KVEQAPDGQV TEIVYKGTHN HPKPQNPRRG SGSAVSSSYA  360
LQCHGANDAS SDALSGTPEN SSASYGEDEM NGVSSRLAGA VGGGDDQFDD EEPDCKRWRS  420
DGEATIMGVG NRTVREPRVV VQTMSDIDIL DDGYRWRKYG QKVVKGNPNP RSYYKCTTPN  480
CPVRKHVERA SQDLRAVVTT GFALSGFGNP SYSYPSMQEQ QQQQSDAMYY DASRTKDEPR  540
DDMFFGHSSM F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-28271500377Probable WRKY transcription factor 4
2lex_A5e-28271500377Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3764820.0AK376482.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3125H17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151292.10.0WRKY transcription factor WRKY24-like
SwissprotQ6B6R41e-126WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLM7ZLT50.0M7ZLT5_TRIUA; Putative WRKY transcription factor 33
STRINGTRIUR3_20325-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-79WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]