PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_20488-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 707aa    MW: 81667.4 Da    PI: 5.3901
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_20488-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.89.9e-20103187191
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                      ++Yn+YA ++GF v++ +++k+       + ++ C+++ k +  ++   +++r++++ ++t+C+ak+ vk+  +g+w+++ +++eHnH+l+p
  TRIUR3_20488-P1 103 EYYNTYALQTGFVVVRGRNYKR------QRFQLDCNRNRKVKLVEDLnLKRKRKKNVIEKTNCQAKIIVKLI-KGEWVIAAVQNEHNHPLSP 187
                      69*******************9......4677******9988755543799999******************.9***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-18103187IPR004330FAR1 DNA binding domain
PfamPF105515.1E-29309399IPR018289MULE transposase domain
PROSITE profilePS509668.939590627IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
QERSAELMDD DEEAAIALSV KVERNASYVD RSLQLVTAEE HDVMEIDDIS SDDTGSQSDS  60
DSSSGSESEK EEGRFFYPAP EALGTVKAPQ VGMKFPTLED AHEYYNTYAL QTGFVVVRGR  120
NYKRQRFQLD CNRNRKVKLV EDLNLKRKRK KNVIEKTNCQ AKIIVKLIKG EWVIAAVQNE  180
HNHPLSPSRS FTRFLTSQKH MSPEERSFSR VLQQSRVPPG EILKILRRMS GFFRELPSKE  240
KQALILQSAE QWRKANLDVE KTLNHFEQLQ LQDPCFFYTV QKDEDGTLRS IFWTDARSRM  300
DYEIFGDFVS FDTTFSTNRH NMPFVPITGM NSRGRTIVLG CALLQDRKAE TYKWMLETFL  360
QEMGGGQIPR SVITSQDEAM AKAIAEVMPQ ARHRFCRWNG KAQEKMAAFV AARGNMKAEL  420
DILVDSSLTE TEFEQGWSAL IQRHDASENE YLQLLWEMRK TWAPVYFMQD FFPFVVSARG  480
SQGAFSLFKE NVLPKDKIEN LIEKYEEMQD KIKKTDEEDV LEAATEPSCF SLQPIERHAS  540
RVYTRQIFLK VQKELLHSTA FKVQEIERGT LYRLDKAYSY ENPEYDRDSF EVSIEPGLTD  600
TYTCQCAKFA RDGILCCHVF RLFTQFGIDE IPEKYIVARW TDGFREEQLE RREEGRLVVA  660
AQREEDAARY AALMSKAAGI GREICGDGAK CDEFMLELDR IREKMAT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144151LKRKRKKN
2146150RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146870.10.0protein FAR1-RELATED SEQUENCE 7-like
TrEMBLT1MRF20.0T1MRF2_TRIUA; Uncharacterized protein
STRINGTraes_6AL_5C48AC7D7.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-77FAR1-related sequence 5