PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_20591-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 221aa MW: 24664.7 Da PI: 9.6575

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_20591-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.2	1.1e-55	31	161	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+++yL+ k+++ +++ ++i+evd++k+ePwdLp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+++ TRIUR3_20591-P1 31 LPPGFRFHPTDEELITYYLRGKIADAGFTA-RAITEVDLNKCEPWDLPEKAKMGEKEWYFFSLRDRKYPTGVRTNRATNAGYWKTTGKDKEIFT 123 79***********************999.89***********99999************************************9 PP NAM 95 k....kgelvglkktLvfykgrapkgektdWvmheyrl 128 +elvg+kktLvfykgrap+gek++Wvmheyrl TRIUR3_20591-P1 124 GqppsAQELVGMKKTLVFYKGRAPRGEKSNWVMHEYRL 161 888877888*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.53E-64	27	182	IPR003441	NAC domain
PROSITE profile	PS51005	60.107	31	182	IPR003441	NAC domain
Pfam	PF02365	3.4E-29	32	161	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MEGSGAGGGG GGGEGAVSKK KSSKEGEEES LPPGFRFHPT DEELITYYLR GKIADAGFTA 60 RAITEVDLNK CEPWDLPEKA KMGEKEWYFF SLRDRKYPTG VRTNRATNAG YWKTTGKDKE 120 IFTGQPPSAQ ELVGMKKTLV FYKGRAPRGE KSNWVMHEYR LHLKPASKSN KDEWVVCRIF 180 AKSPGVKKYP SSTNAHSRSH HHPYTLDMDQ ASPNLYPADS S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-56	28	188	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-56	28	188	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-56	28	188	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-56	28	188	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	5e-56	28	188	17	174	NAC domain-containing protein 19
3swm_B	5e-56	28	188	17	174	NAC domain-containing protein 19
3swm_C	5e-56	28	188	17	174	NAC domain-containing protein 19
3swm_D	5e-56	28	188	17	174	NAC domain-containing protein 19
3swp_A	5e-56	28	188	17	174	NAC domain-containing protein 19
3swp_B	5e-56	28	188	17	174	NAC domain-containing protein 19
3swp_C	5e-56	28	188	17	174	NAC domain-containing protein 19
3swp_D	5e-56	28	188	17	174	NAC domain-containing protein 19
4dul_A	4e-56	28	188	14	171	NAC domain-containing protein 19
4dul_B	4e-56	28	188	14	171	NAC domain-containing protein 19
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00277	DAP	Transfer from AT2G24430	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808, ECO:0000269\|PubMed:18305205, ECO:0000305\|PubMed:15723790}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020186546.1	1e-140	NAC domain-containing protein 92-like
Swissprot	Q9FLR3	5e-81	NAC79_ARATH; NAC domain-containing protein 79
TrEMBL	T1MRQ1	1e-163	T1MRQ1_TRIUA; Uncharacterized protein
STRING	TRIUR3_20591-P1	1e-164	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9361	38	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	3e-88	NAC domain containing protein 38

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Vidal EA,Álvarez JM,Gutiérrez RA Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function. Plant Signal Behav, 2014. 9(3): p. e28501 [PMID:24642706] Lee MH,Jeon HS,Kim HG,Park OK An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164. New Phytol., 2017. 214(1): p. 343-360 [PMID:28032643]