PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_20638-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GATA
Protein Properties Length: 292aa    MW: 32947.2 Da    PI: 6.8531
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_20638-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA512e-16123156134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C++CgttkTp+W+rg  g +tLCnaCG++y++++
  TRIUR3_20638-P1 123 CRHCGTTKTPQWHRGAAGCRTLCNACGVRYKRER 156
                      *******************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.1E-9117165IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.347117153IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-12118154No hitNo description
Gene3DG3DSA:3.30.50.104.1E-13121155IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.64E-14122157No hitNo description
PROSITE patternPS003440123148IPR000679Zinc finger, GATA-type
PfamPF003209.9E-14123156IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MATADGLHGE AVVDDLLCSG GDLQSFFDQL GLEVAACGGG EGAEEELEWL SNKDAFPAVE  60
EMDLELAVMG ARRAQEELES LPNKDAFPTV EEMEQEPAVM GSRRKVVRRR RGAMSARPGQ  120
RRCRHCGTTK TPQWHRGAAG CRTLCNACGV RYKRERPEYA PSHQEGLEVG GGEALETMEA  180
EPSEVGSQTK RVVRQRRTLA WPPTAAEPEQ RWCQHCGKMK KPRWREGAAA EQEREWLVNK  240
NPFHSIETFN FGFDLQFWPG QRFFQINQQQ LAYKNMSIPR ILPPSRKNHV IL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM7YQY10.0M7YQY1_TRIUA; GATA transcription factor 12
STRINGTRIUR3_20638-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP157091414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.19e-14GATA transcription factor 9