PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_20720-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 567aa    MW: 64207.9 Da    PI: 6.9491
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_20720-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR149.11.9e-15215294190
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      ++Yn ++ e GF +r  k++++  +g   +++ vC+++gk+e+e+++         + rtgCka++++ ++kd+ w+v+ +++eHnH+l+
  TRIUR3_20720-P1 215 EMYNLFSWENGFGIRHYKTRTN-GTGYKAMHEIVCQCQGKSEKENSE---------SCRTGCKAMVRLLRTKDHGWYVSLFVNEHNHPLS 294
                      58**************998887.7788999**********9987666.........9*******************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.8E-12215294IPR004330FAR1 DNA binding domain
PfamPF105519.4E-28416508IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
LPYCPPHSSP SFIWPVACSI FSAPDPMLES MADKPTWVTS LQMSHGEPVP FIEPSPSFLP  60
MIKSAAQQHT TVAIAATNHH EPAVSRIQSV VEPQIEGRLG DLDLFELDSW HGGQDGGTVA  120
ETRISSPISV VADATVRANE DALIQKTEPI VQQPTARVGC WKRRNKGVTG PDARVCPSKT  180
SYLQDCIARA TDNHSKDLFA PIEGILFDTC NEAYEMYNLF SWENGFGIRH YKTRTNGTGY  240
KAMHEIVCQC QGKSEKENSE SCRTGCKAMV RLLRTKDHGW YVSLFVNEHN HPLSAGYEET  300
RYWNSHSVID PLLKGFIRNL RENNVSLSKV YNILCVAHGD GASVPFRKEN LKYLCSRIAQ  360
ESINEDIYKT VDLLQQMKTA DPNLEVCVNV DKEGSVQTIL WCTGKNREDY AHFGDVVTFD  420
TTCRTNLYNM PFGIFVGVNN HFQSTIFGGV LMRHENIKGF EWTFRTFVET MNGKHPQTIL  480
TDQCKAMEGA IKSTLPNTQH RWCKWHVLRC AKEKLGPVYS KNSDFKREFH AIINEIICVK  540
EFECKWSELL QKFNLADNLY LENLYSK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020182565.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_020182566.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_020182567.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_020182568.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLT1MS230.0T1MS23_TRIUA; Uncharacterized protein
STRINGTRIUR3_20720-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-54FAR1-related sequence 5