PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_20728-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TCP
Protein Properties Length: 243aa    MW: 26652.7 Da    PI: 6.1029
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_20728-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.61.1e-3473172389
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 
                       ++drhski T++g RdRR+Rls+++a+ fF+Lqd+LGfdk+skt++WLl+q+kpai+ l ++s  +a ++ e+++ss s+  +++g       
  TRIUR3_20728-P1  73 FRTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDQLGFDKASKTVDWLLTQSKPAIDRLSESSRLNAARAgEDGMSSLSSV-EREGrrlkete 165
                      689************************************************************7766655554444443333.22221232222 PP

              TCP  89 ......k 89 
                            k
  TRIUR3_20728-P1 166 laagsgK 172
                      2222221 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-3374154IPR005333Transcription factor, TCP
PROSITE profilePS5136934.33474132IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MAPPAHLDHQ IQHYDHFFPG HGNQFNSETL EAVLMRPRPP APPLVEMPPA NEARTGAVQA  60
AGTGHARARK RPFRTDRHSK IRTAQGVRDR RMRLSLDVAR DFFALQDQLG FDKASKTVDW  120
LLTQSKPAID RLSESSRLNA ARAGEDGMSS LSSVEREGRR LKETELAAGS GKGAADAEKA  180
MKARGGGTSV LMEHRRENGG LMSASMTGGE YYDLGEMMCI NAGECDDDGD YDEDGDFLDG  240
MQY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0050935e-75AP005093.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1294_G06.
GenBankAP0149655e-75AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankEU7024075e-75EU702407.1 Oryza sativa Japonica Group putative TCP transcription factor (DP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020173868.11e-144transcription factor TCP18-like
TrEMBLM7YM041e-179M7YM04_TRIUA; Uncharacterized protein
STRINGTRIUR3_20728-P11e-179(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.28e-28TCP family protein