PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_21181-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 167aa    MW: 18689.5 Da    PI: 8.7067
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_21181-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH231.5e-07961371054
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHH..HHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAv..eYIksL 54 
                      +rRR+ri +++  L+ l+P++      K +Ka++L +A+  eY+k+L
  TRIUR3_21181-P1  96 KRRRSRIDEKMKALQILIPNS-----NKTDKASMLDEAIliEYLKQL 137
                      8*******************7.....5***********544999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.96286135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-596137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-1196154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.38E-896140No hitNo description
SMARTSM003530.004896143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.11E-1096146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MSRFRRHLEG ATGFYKSEMG GSSEPESHGT SDCPRGGGGS SSKCTRAAEV HNLSERVVAR  60
FPVVNHFPLS FTPLFCSSRP IFLADHCLLA CLIGVKRRRS RIDEKMKALQ ILIPNSNKTD  120
KASMLDEAIL IEYLKQLRLQ DNEMLKRQSE SMTLQCSCTV PLNITQE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3747872e-33AK374787.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3076F24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561052.22e-28transcription factor SPATULA
RefseqXP_014752502.12e-28transcription factor SPATULA
TrEMBLM7YDE21e-120M7YDE2_TRIUA; Transcription factor SPATULA
STRINGTRIUR3_21181-P11e-121(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6054822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67110.12e-18bHLH family protein