PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_21195-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 493aa    MW: 54972.5 Da    PI: 4.9105
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_21195-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.44.6e-12841631599
                      -EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  15 rlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       l++p +  ++  +++ + s  ++le+++gr+++vk+   k  gr++lt+GW++Fv+an+++e+  ++F + g+s+f  +v++f++
  TRIUR3_21195-P1  84 HLCIPWEVSSQLrDMI-PDSEPIKLETPDGRTYSVKF--FK-FGRITLTSGWRGFVDANHIEENNPMLFVYRGNSTF--KVQIFNS 163
                      3777777776666333.35557***************..44.46899************************999999..9999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.67470164IPR003340B3 DNA binding domain
SMARTSM010191.2E-671164IPR003340B3 DNA binding domain
SuperFamilySSF1019361.51E-1576164IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-1378165IPR015300DNA-binding pseudobarrel domain
PfamPF023624.9E-1084163IPR003340B3 DNA binding domain
CDDcd100178.57E-1285162No hitNo description
Gene3DG3DSA:2.40.330.102.6E-12224323IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-13224323IPR015300DNA-binding pseudobarrel domain
CDDcd100173.91E-10229320No hitNo description
SMARTSM010190.0021231322IPR003340B3 DNA binding domain
PROSITE profilePS508638.586232322IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MDMGELFNPG DLPPTPRPWA FVFFPCLGDA GLRSRCVRPC PGCGGAGGAG CDCGDCEEWR  60
RYCYWNHDHG TKQFLLFASH DKAHLCIPWE VSSQLRDMIP DSEPIKLETP DGRTYSVKFF  120
KFGRITLTSG WRGFVDANHI EENNPMLFVY RGNSTFKVQI FNSSGRDKFL PCSQPPCNHR  180
VLNEQVVPHP EHVDSSAHFG YTMLPGSFVT KAQDDKLLEW ANTIKSGFPL FVAAMDESNV  240
SLIDCHVYIP LRLVDQFKEV VKIVALDKSI YVVGAKKHNE DQIVLQSGWD RFVTDQCIQQ  300
NDFLIFIIQG ETRLKVLVLD PSGSEKTFAM GNSSNAQEKP PLPPTVTNQS SEDNELTDQS  360
SDNELTELSS DNELTDQSSD NELTDLSSDD YEVLGTDTTT SRREQRPLRS CRAKAEKMGS  420
TSCPSTKSDH RHKAGNSNEA IGSETADGVS KPIQLDYSNF SRVNTAYGML GLFSSVNHCL  480
NLILSYESLS ECI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170062.10.0B3 domain-containing protein Os12g0591400-like isoform X1
TrEMBLT1MTD00.0T1MTD0_TRIUA; Uncharacterized protein
STRINGTRIUR3_21195-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1636348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.11e-09B3 family protein