PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_21370-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 340aa    MW: 37199.7 Da    PI: 7.4214
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_21370-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.89.4e-142463231490
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
               B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                      + l +p++f  +hg+ +++    +l    g+sW+v+l+     +++ r+ ++ GW +F+ +n+L++g+++ F+  g+  + 
  TRIUR3_21370-P1 246 QYLNVPREFSLAHGYAERK---KVLLRMGGESWTVNLKNvhnVRRKARTSFRYGWHQFCVDNHLRVGETCFFRALGQgGGD 323
                      56889********999665...45566799*******8777655555699***********************77763333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-20228326IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.1E-4231330IPR003340B3 DNA binding domain
CDDcd100176.58E-12231333No hitNo description
SuperFamilySSF1019363.53E-14231320IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.476233332IPR003340B3 DNA binding domain
PfamPF023627.8E-11246322IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MAAGDVATVF LEMSLGTRLA VSFPAASTTV ADLKRRVSHE HAACFPNYGQ IAVQSVKVDQ  60
GGSWFHLADS MAVRDAFQFH GANETWHLQV DALPHAQHLD QGLATEGHSK DSSAAHSEPS  120
CEMLADQVKV EVGADSEPSC EMLTDQLKVE VGAEEPLVAK GKGSSNGDDP KGSKEAEATS  180
TEQGACERKR LRPRTRVGKT PVTKRANSSG SSESEEMDIN TVGVYAPPSQ FVVMLKECHF  240
VTKNGQYLNV PREFSLAHGY AERKKVLLRM GGESWTVNLK NVHNVRRKAR TSFRYGWHQF  300
CVDNHLRVGE TCFFRALGQG GGDRHVLKVE GRRLDGSYTS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187193RKRLRPR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3760081e-85AK376008.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3112F01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186935.10.0uncharacterized protein LOC109772638
TrEMBLT1MTU40.0T1MTU4_TRIUA; Uncharacterized protein
STRINGTRIUR3_21370-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.19e-07B3 family protein