PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_21570-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 1191aa    MW: 133833 Da    PI: 7.1305
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_21570-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.0004710671090122
                       EEET..TTTEEESSHHHHHHHHHH CS
          zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt 22  
                       ++C    C++sFs++ +L  H r 
  TRIUR3_21570-P1 1067 FPCDieGCDMSFSSQQDLLLHKRD 1090
                       789999***************985 PP
2zf-C2H210.60.001811501176123
                       EEET..TTTEEESSHHHHHHHHHH..T CS
          zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                       y+C    Cg++F+  s++ rH r+  H
  TRIUR3_21570-P1 1150 YECMvpGCGQTFRFVSDFSRHKRKtgH 1176
                       788888****************99666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003559.410671089IPR015880Zinc finger, C2H2-like
SMARTSM003551510901114IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9710901119IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.2E-410921118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028010921114IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-1011191144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.001611201144IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.40611201149IPR007087Zinc finger, C2H2
PROSITE patternPS00028011221144IPR007087Zinc finger, C2H2
SuperFamilySSF576671.42E-1011301172No hitNo description
Gene3DG3DSA:3.30.160.602.3E-1011451173IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.2411501176IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.07611501181IPR007087Zinc finger, C2H2
PROSITE patternPS00028011521176IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0035067Biological Processnegative regulation of histone acetylation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1191 aa     Download sequence    Send to blast
MMAFQTLNQK TTVLSPEVLL SAGVPCCRYF SKADWFRTLE NLLSPSLELI IVVLAMVAKE  60
AAIRRASTNC GPMISHYQLL YELALSLSQR EPKDFHTLPR SSRLRDKKKK DEGDTMVKEK  120
FVGSVIENNN LLSILLDKSS CIIVPETPFP PTSFPTMMEP ELTVKQSLTG GHCSISQQAV  180
HNMSVDVALD KSIVVENMSH SQSVTEASLS AYNRRKLYET KYGELGTAAF CLSPSKLQSG  240
VTDKDKRGGL LDQGRLPCVQ CGILSFACVA IIQPREAAVQ FVLSREGISS SAKPGEVSES  300
DGISNWITNN IEMVPQQGQA SEALTVSLAH VSDRCGQLYS RNNNGSTSAL GLLASTYGSS  360
DSEEESNQGK NNQLLETSVS FSSTVQRQRS NSHLYEECCE AKTTTSLLKS IEDNSTTITR  420
CGRDTDINHL AKLREQGTTY DQCSVYVDLA NDLTISGVKA YSDTHVTTAK SSIEPDVLTQ  480
LKYNNDSCRM HVFCLEHALG TWTQLQKIGG ANVMLLCHPE YPRAESAAKF IAEELGLKPD  540
WKDVAFEEAT DDDIRRIQLA LHDEDAEPAS NDWAVKMGIN IYYSAKQSKS PLYSKQIPYN  600
SIIYEAFGQE NPDNLTDYGR QRSGVTKKRV AGCWCGKVWM SNQVHPFLVR EHEEHNRAIV  660
CSKVMLGANY HEIVYDEPSL TCNTMVNCSP SKRISRRKGR DSIEKSGARK KRCSANDEAT  720
LHCSSLGMNS KTISDQPRNF DDHDKHEGGK ITEAPSTQQY QQYTLQSMNM KSSSNKPKDD  780
KGNRNFLDLY DEANDVDCWF NIDSGDNAAI RHLEDSRQQE LGTVKAKSPG KLQGNMRKSS  840
KCKARDDSLN GDKKVQKMNK KSISRKQKDV EINTQFREEY DEDNNWEEVP EGKDHDVKVE  900
SRAKTRSGED DKRNNNSHEL HDEDNDMDCW HDIHGRDNAT MGNLDNSPVQ RLEAAEVKSG  960
GKLHCCKRKS SKGKAKDDYS YGDEKLQMLN IESISRKQKS DSQFDEGCDR DNALDSLLND  1020
VDEAARENCY EVREEEMDGM EVKPRGKMQT GKRKTSRCQA GDKAAKFPCD IEGCDMSFSS  1080
QQDLLLHKRD ICPVKGCKKK FFCHKYLLQH RKVHMDERPL NCEWKGCKKT FKWPWARTEH  1140
MRVHTGVRPY ECMVPGCGQT FRFVSDFSRH KRKTGHSSGV QVLSLKGMLI E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A6e-561064117720133Lysine-specific demethylase REF6
6a58_A6e-561064117720133Lysine-specific demethylase REF6
6a59_A6e-561064117720133Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104110RDKKKKD
2695711RRKGRDSIEKSGARKKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00608ChIP-seqTransfer from AT3G48430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201011.10.0lysine-specific demethylase JMJ705-like
TrEMBLT1MUD30.0T1MUD3_TRIUA; Uncharacterized protein
STRINGTRIUR3_21570-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67183035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.16e-93relative of early flowering 6